RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 MOSPD3O75425 235 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 C21orf62Q9NYP8 219 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 TGIF2-C20orf24A0A0A6YYL0 155 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 KBTBD11-OT1A0A1B0GTJ5 212 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 C19orf67A6NJJ6 358 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 CD160O95971 181 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 SMIM13P0DJ93 91 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 KLK2P20151 261 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 ZNF703Q9H7S9 590 aaPredicted RBP7.94□□□□□ -1.14
CUX1-201ENST00000292535 A0A1W2PPV9 198 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 PATE3B3GLJ2 98 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 CYB5R2Q6BCY4 276 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.94□□□□□ -1.14
CUX1-201ENST00000292535 TCRBV4S1A1TA0A5B7 111 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 USP9YO00507 2555 aaPredicted RBP7.94□□□□□ -1.14
CUX1-201ENST00000292535 ZNF818PQ6ZRF7 136 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 FAM57AQ8TBR7 257 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 DLL3Q9NYJ7 618 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 GCM2O75603 506 aaPredicted RBP7.94□□□□□ -1.14
CUX1-201ENST00000292535 UCP3P55916 312 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 TRAV8-6A0A0B4J262 113 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 RSPO4Q2I0M5 234 aaPredicted RBP7.94□□□□□ -1.14
CUX1-201ENST00000292535 OR5A1Q8NGJ0 315 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 SSC4DQ8WTU2 575 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 RPRMQ9NS64 109 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 TNRC6AQ8NDV7 1962 aaKnown RBP7.94□□□□□ -1.14
CUX1-201ENST00000292535 TRGV11A0A075B6L2 103 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 RRHO14718 337 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 RNASEH2CQ8TDP1 164 aaKnown RBP7.94□□□□□ -1.14
CUX1-201ENST00000292535 SLC25A2Q9BXI2 301 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 NPIPB13A6NJU9 1138 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 SP9P0CG40 484 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 GLRXP35754 106 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 COX6A1P12074 109 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 PPP1R27Q86WC6 154 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 IGKV1D-16P01601 117 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 ZNF79Q15937 498 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 NXT2Q9NPJ8 142 aaKnown RBP7.93□□□□□ -1.14
CUX1-201ENST00000292535 M0R381 172 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 VSIG10L2P0DP72 767 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 ZNF250P15622 560 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 C1orf100Q5SVJ3 147 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 SLC50A1Q9BRV3 221 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 CXCL2P19875 107 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 ORMDL3Q8N138 153 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 LINC01560Q8TB33 94 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 LRP5O75197 1615 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 C19orf48Q6RUI8 117 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 ZAR1Q86SH2 424 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 STHQ8IWL8 128 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 SLC22A18ASQ8N1D0 253 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 RLFQ13129 1914 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 DPRXA6NFQ7 191 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 ZG16O60844 167 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 EIF3GO75821 320 aaKnown RBP eCLIP7.93□□□□□ -1.14
CUX1-201ENST00000292535 PEBP1P30086 187 aaKnown RBP7.93□□□□□ -1.14
CUX1-201ENST00000292535 NANOS3P60323 173 aaKnown RBP7.93□□□□□ -1.14
CUX1-201ENST00000292535 NPIPB3Q92617 1050 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 KCNS1Q96KK3 526 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 HS3ST3B1Q9Y662 390 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 COL18A1P39060 1754 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 ZNF883P0CG24 379 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 TEX45Q8NA69 505 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 KCNK17Q96T54 332 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 FASNP49327 2511 aaKnown RBP7.93□□□□□ -1.14
CUX1-201ENST00000292535 IGKV1D-33P01593 117 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 IGKV1-33P01594 117 aa7.93□□□□□ -1.14
CUX1-201ENST00000292535 A0A1W2PQF6 199 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 HIGD1CA8MV81 97 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 FOXA2Q9Y261 457 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 TMEM50AO95807 157 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 TMEM187Q14656 261 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 Q6ZT83 130 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 FAM181AQ8N9Y4 354 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 DANCRP0C864 163 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 DSCR9P59020 149 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 CBLN4Q9NTU7 201 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 TSC2P49815 1807 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 FNDC1Q4ZHG4 1894 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 ZNF98A6NK75 572 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 UBE2DNLQ8IWF7 75 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 LILRA1O75019 489 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 APOHP02749 345 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 DDTP30046 118 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 LIMS1P48059 325 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 ZNF324BQ6AW86 544 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 OR5AN1Q8NGI8 311 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 SAP25Q8TEE9 199 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 LOC285556D6RIA3 1793 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 CYP2G1PQ6ZSU1 146 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 ELF5Q9UKW6 265 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 SLC25A15Q9Y619 301 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 PLXNB3Q9ULL4 1909 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 NBEAP1P0C6P0 100 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 PAX2Q02962 417 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 LDLRAD2Q5SZI1 272 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 PEAR1Q5VY43 1037 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 ASCL2Q99929 193 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 IGKV1-8A0A0C4DH67 115 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms