RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ELLP55199 621 aaPredicted RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BDP58876 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BCP62807 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST2H2BEQ16778 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 SLC24A4Q8NFF2 622 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BHQ93079 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BNQ99877 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BMQ99879 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 GAR1Q9NY12 217 aaKnown RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 IGSF10Q6WRI0 2623 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 LOC105371242A0A075B767 164 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 TEX50A0A1B0GTY4 177 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 YIF1AO95070 293 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 NPY1RP25929 384 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 S100A2P29034 98 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 MEF2BQ02080 365 aaPredicted RBP12.4□□□□□ -0.42
SF3B4-201ENST00000271628 NPCDR1Q9BY65 106 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 COMMD5Q9GZQ3 224 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 ONECUT1Q9UBC0 465 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 ACACBO00763 2458 aa12.4□□□□□ -0.42
SF3B4-201ENST00000271628 ELOA3CA0A087WX78 387 aaPredicted RBP12.39□□□□□ -0.43
SF3B4-201ENST00000271628 CTXND1A0A1B0GTU2 59 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 LINC00587B1AMM8 73 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 TMEM250H0YL14 139 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 M0R1W7 72 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 TRGC2P03986 189 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 RPL8P62917 257 aaKnown RBP12.39□□□□□ -0.43
SF3B4-201ENST00000271628 TMEM167AQ8TBQ9 72 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 HINT2Q9BX68 163 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 NAT8Q9UHE5 227 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 WDR83OSQ9Y284 106 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 INSIG2Q9Y5U4 225 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 CFAP46Q8IYW2 2715 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 C22orf46C9J442 243 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 PRSS46E5RG02 174 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 PSMB3P49720 205 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 VMA21Q3ZAQ7 101 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 CYP2G1PQ6ZSU1 146 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 NPVFQ9HCQ7 196 aa12.39□□□□□ -0.43
SF3B4-201ENST00000271628 IGKV1D-33P01593 117 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 IGKV1-33P01594 117 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 CD81P60033 236 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 TMEM241Q24JQ0 296 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 OR1L8Q8NGR8 309 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 MANBALQ9NQG1 85 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 IFITM10A6NMD0 228 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 INS-IGF2F8WCM5 200 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 PPP1R2P9O14990 202 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 ACSM6Q6P461 480 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 OR4P4Q8NGL7 312 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 OR10G9Q8NGN4 311 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 OR10G7Q8NGN6 311 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 SMIM7Q9BQ49 75 aa12.38□□□□□ -0.43
SF3B4-201ENST00000271628 ACTR3CQ9C0K3 210 aaPredicted RBP12.38□□□□□ -0.43
SF3B4-201ENST00000271628 IGHV1-3A0A0C4DH29 117 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 FNDC10F2Z333 226 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 CA2P00918 260 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 ARF6P62330 175 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 C1orf122Q6ZSJ8 110 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 Q8N7P7 452 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 OR11H6Q8NGC7 330 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 TMEM170AQ8WVE7 144 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 RPEQ96AT9 228 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 NDUFA4L2Q9NRX3 87 aa12.37□□□□□ -0.43
SF3B4-201ENST00000271628 A0A1W2PN81 502 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 SMCO3A2RU48 225 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 OVOL3O00110 214 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 ENSAO43768 121 aaKnown RBP12.36□□□□□ -0.43
SF3B4-201ENST00000271628 IGLV2-23P01705 113 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 MYOD1P15172 320 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 COX7A1P24310 79 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 CHRNA7P36544 502 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 ERHP84090 104 aaKnown RBP12.36□□□□□ -0.43
SF3B4-201ENST00000271628 TREML4Q6UXN2 200 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 PNKDQ8N490 385 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 TEX45Q8NA69 505 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 DMRT1Q9Y5R6 373 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 NDUFS7O75251 213 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 TRGC1P0CF51 173 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 PRTN3P24158 256 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 C2orf83Q53S99 150 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 FFAR4Q5NUL3 377 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 SPNS3Q6ZMD2 512 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 MOB3BQ86TA1 216 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 KIR3DL3Q8N743 410 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 ABHD5Q8WTS1 349 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 RNF5Q99942 180 aa12.36□□□□□ -0.43
SF3B4-201ENST00000271628 HTR1DP28221 377 aa12.35□□□□□ -0.43
SF3B4-201ENST00000271628 CEACAM3P40198 252 aa12.35□□□□□ -0.43
SF3B4-201ENST00000271628 DLX1P56177 255 aa12.35□□□□□ -0.43
SF3B4-201ENST00000271628 HNF4GQ14541 408 aa12.35□□□□□ -0.43
SF3B4-201ENST00000271628 ACOT6Q3I5F7 207 aaPredicted RBP12.35□□□□□ -0.43
SF3B4-201ENST00000271628 KCNIP2Q9NS61 270 aa12.35□□□□□ -0.43
SF3B4-201ENST00000271628 LY6LH3BQJ8 138 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 RAB31Q13636 194 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 ADIRFQ15847 76 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 BSXQ3C1V8 233 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 PYY3Q5JQD4 70 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 HIST3H2BBQ8N257 126 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms