RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 IL3RAP26951 378 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 PPOXP50336 477 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 DAZAP2Q15038 168 aaPredicted RBP13.55□□□□□ -0.24
CTCF-201ENST00000264010 RPL39P5Q59GN2 51 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 BEND2Q8NDZ0 799 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 ABHD17AQ96GS6 310 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 P2RX4Q99571 388 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 QTRT1Q9BXR0 403 aaKnown RBP13.55□□□□□ -0.24
CTCF-201ENST00000264010 COMMD5Q9GZQ3 224 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 ELOVL5Q9NYP7 299 aa13.55□□□□□ -0.24
CTCF-201ENST00000264010 CEACAM4O75871 244 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 WISP2O76076 250 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 C11orf53Q8IXP5 236 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 MUC15Q8N387 334 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 LEAP2Q969E1 77 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 GSX1Q9H4S2 264 aaPredicted RBP13.54□□□□□ -0.24
CTCF-201ENST00000264010 IDI2-AS1Q9NZ38 188 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 WNT2P09544 360 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 BTF3P20290 206 aaKnown RBP13.54□□□□□ -0.24
CTCF-201ENST00000264010 NHLH1Q02575 133 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 ICAM4Q14773 271 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 TMEM140Q9NV12 185 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 ABHD5Q8WTS1 349 aa13.54□□□□□ -0.24
CTCF-201ENST00000264010 BDP1A6H8Y1 2624 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 PRNDQ9UKY0 176 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 NDUFB4O95168 129 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 BRS3P32247 399 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 DUTP33316 252 aaKnown RBP13.53□□□□□ -0.24
CTCF-201ENST00000264010 RPL31P62899 125 aaKnown RBP13.53□□□□□ -0.24
CTCF-201ENST00000264010 FAM216AQ8WUB2 273 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 NEU1Q99519 415 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 GTSF1LQ9H1H1 148 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 MPDU1O75352 247 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 TMEM30BQ3MIR4 351 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 DKK4Q9UBT3 224 aa13.53□□□□□ -0.24
CTCF-201ENST00000264010 SLC25A10Q9UBX3 287 aaPredicted RBP13.53□□□□□ -0.24
CTCF-201ENST00000264010 IGKV1D-17A0A075B6S4 117 aa13.52□□□□□ -0.24
CTCF-201ENST00000264010 TRAV1-1A0A0B4J248 108 aa13.52□□□□□ -0.24
CTCF-201ENST00000264010 KBTBD11-OT1A0A1B0GTJ5 212 aa13.52□□□□□ -0.24
CTCF-201ENST00000264010 ENSAO43768 121 aaKnown RBP13.52□□□□□ -0.24
CTCF-201ENST00000264010 HOXA4Q00056 320 aaPredicted RBP13.52□□□□□ -0.24
CTCF-201ENST00000264010 GUSBP1Q15486 140 aa13.52□□□□□ -0.24
CTCF-201ENST00000264010 TMEM14EPQ6UXP3 125 aa13.52□□□□□ -0.24
CTCF-201ENST00000264010 CREBBPQ92793 2442 aa13.52□□□□□ -0.24
CTCF-201ENST00000264010 PPIAL4EA0A075B759 164 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 PPIAL4DF5H284 164 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 PPIAL4FP0DN26 164 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 NPY1RP25929 384 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 ERHP84090 104 aaKnown RBP13.52□□□□□ -0.25
CTCF-201ENST00000264010 MEF2BQ02080 365 aaPredicted RBP13.52□□□□□ -0.25
CTCF-201ENST00000264010 SPSB3Q6PJ21 355 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 DERL1Q9BUN8 251 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 ZFHX2Q9C0A1 2572 aaPredicted RBP13.52□□□□□ -0.25
CTCF-201ENST00000264010 RELBQ01201 579 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 MBD3L1Q8WWY6 194 aa13.52□□□□□ -0.25
CTCF-201ENST00000264010 ARL16Q0P5N6 197 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 AMMECR1LQ6DCA0 310 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 VKORC1L1Q8N0U8 176 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 RBMXL3Q8N7X1 1067 aaKnown RBP13.51□□□□□ -0.25
CTCF-201ENST00000264010 TCF19Q9Y242 345 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 ZFHX4Q86UP3 3567 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 CGAP01215 116 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 PSG1P11464 419 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 TM4SF20Q53R12 229 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.51□□□□□ -0.25
CTCF-201ENST00000264010 RBFOX2O43251 390 aaKnown RBP eCLIP13.51□□□□□ -0.25
CTCF-201ENST00000264010 CD55P08174 381 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 RPRMLQ8N4K4 120 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 OR2T6Q8NHC8 308 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 MS4A5Q9H3V2 200 aa13.51□□□□□ -0.25
CTCF-201ENST00000264010 IGHV1-46P01743 117 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 OR5AL1P0C617 328 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 OR8I2Q8N0Y5 310 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 MRPL18Q9H0U6 180 aaKnown RBP13.5□□□□□ -0.25
CTCF-201ENST00000264010 C11orf1Q9H5F2 150 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 FAM215AQ9Y5M1 114 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 DPRXA6NFQ7 191 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 CHEK1O14757 476 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 SERF1AO75920 110 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 OR10J4P0C629 311 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 SUB1P53999 127 aaKnown RBP eCLIP13.5□□□□□ -0.25
CTCF-201ENST00000264010 LINC00473A8K010 186 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 CD3EP07766 207 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 HSPE1P61604 102 aaKnown RBP13.5□□□□□ -0.25
CTCF-201ENST00000264010 PAFAH1B2P68402 229 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 C3orf36Q3SXR2 165 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 FAM53AQ6NSI3 398 aaPredicted RBP13.5□□□□□ -0.25
CTCF-201ENST00000264010 GBGT1Q8N5D6 347 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 FAM216BQ8N7L0 139 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 NPCDR1Q9BY65 106 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 FNDC4Q9H6D8 234 aaPredicted RBP13.5□□□□□ -0.25
CTCF-201ENST00000264010 VSIRQ9H7M9 311 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 TMEM106BQ9NUM4 274 aa13.5□□□□□ -0.25
CTCF-201ENST00000264010 CLEC3BP05452 202 aa13.49□□□□□ -0.25
CTCF-201ENST00000264010 NPVFQ9HCQ7 196 aa13.49□□□□□ -0.25
CTCF-201ENST00000264010 TBL2Q9Y4P3 447 aaKnown RBP13.49□□□□□ -0.25
CTCF-201ENST00000264010 OR51B2Q9Y5P1 312 aa13.49□□□□□ -0.25
CTCF-201ENST00000264010 IFITM10A6NMD0 228 aa13.49□□□□□ -0.25
CTCF-201ENST00000264010 TM4SF5O14894 197 aa13.49□□□□□ -0.25
CTCF-201ENST00000264010 CFHR2P36980 270 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms