RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 PPP1R3EQ9H7J1 279 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 MANBALQ9NQG1 85 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 SCN8AQ9UQD0 1980 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 SELENOTP62341 195 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 PSG9Q00887 426 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 C19orf35Q6ZS72 473 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 SRSF9Q13242 221 aaKnown RBP eCLIP11.45□□□□□ -0.58
SIX4-201ENST00000216513 LYPD2Q6UXB3 125 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 KLHDC3Q9BQ90 382 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 PHLDA3Q9Y5J5 127 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 CTDSPLO15194 276 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 CDS2O95674 445 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 GATA2P23769 480 aaPredicted RBP11.45□□□□□ -0.58
SIX4-201ENST00000216513 GLMPQ8WWB7 406 aa11.45□□□□□ -0.58
SIX4-201ENST00000216513 NMUP48645 174 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 CX3CL1P78423 397 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 ZNF146Q15072 292 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 CXorf1O96002 111 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 C2orf68Q2NKX9 166 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 FAM159AQ6UWV7 190 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 TECTAO75443 2155 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 GCSHP23434 173 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 RELBQ01201 579 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 LINC00114Q6XXX2 140 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 TP53RKQ96S44 253 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 GPR61Q9BZJ8 451 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 C5orf66Q9H5L9 145 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 FAM74A7A6NL05 159 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 ERVK11-1P61568 191 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 FAM74A3Q4VXF1 159 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 RPUSD1Q9UJJ7 312 aaKnown RBP11.44□□□□□ -0.58
SIX4-201ENST00000216513 FOXI3A8MTJ6 420 aaPredicted RBP11.44□□□□□ -0.58
SIX4-201ENST00000216513 CIDEAO60543 219 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 MFAP2P55001 183 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 SIGIRRQ6IA17 410 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 OR51G1Q8NGK1 321 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 PACRGQ96M98 296 aaPredicted RBP11.44□□□□□ -0.58
SIX4-201ENST00000216513 TMEM222Q9H0R3 208 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 VAX2Q9UIW0 290 aa11.44□□□□□ -0.58
SIX4-201ENST00000216513 C19orf54Q5BKX5 351 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 PGPA6NDG6 321 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 SAA4P35542 130 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 PQLC2Q6ZP29 291 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 SELENOHQ8IZQ5 122 aaKnown RBP11.43□□□□□ -0.58
SIX4-201ENST00000216513 MAP1LC3CQ9BXW4 147 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 TRBV5-7A0A0A0MS05 114 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 TMEM189A5PLL7 270 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 APCSP02743 223 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 C1orf100Q5SVJ3 147 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 RIGQ13278 110 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 DMRTA1Q5VZB9 504 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 PHYHIPLQ96FC7 376 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 GATA3P23771 443 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 DPH3P1Q9H4G8 78 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 TNFSF18Q9UNG2 199 aa11.43□□□□□ -0.58
SIX4-201ENST00000216513 GRIFINA4D1Z8 144 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 HMSDA8MTL9 139 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 ARL14EPLP0DKL9 152 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 RAB9AP51151 201 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 GAS1P54826 345 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 ZNF56Q15929 161 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 WDR73Q6P4I2 378 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 PIP4P2Q8N4L2 257 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 IGHV1-8P0DP01 117 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 ELOBQ15370 118 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 FAM53AQ6NSI3 398 aaPredicted RBP11.42□□□□□ -0.58
SIX4-201ENST00000216513 EIF4E3Q8N5X7 224 aaKnown RBP11.42□□□□□ -0.58
SIX4-201ENST00000216513 ZNF502Q8TBZ5 544 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 WDR81Q562E7 1941 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 M0R3E3 92 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 DLX1P56177 255 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 RRHO14718 337 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 TRGC2P03986 189 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 CD1AP06126 327 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 MAS1LP35410 378 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 LYZL4Q96KX0 146 aa11.42□□□□□ -0.58
SIX4-201ENST00000216513 MED12Q93074 2177 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 C17orf98A8MV24 154 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 RAG2P55895 527 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 TEX38Q6PEX7 206 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 MLNRO43193 412 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 CEACAM4O75871 244 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 CEACAM8P31997 349 aaPredicted RBP11.41□□□□□ -0.58
SIX4-201ENST00000216513 DMRTC2Q8IXT2 367 aaPredicted RBP11.41□□□□□ -0.58
SIX4-201ENST00000216513 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.41□□□□□ -0.58
SIX4-201ENST00000216513 DOCK9Q9BZ29 2069 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 E9PQ18 207 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 SAA1P0DJI8 122 aaPredicted RBP11.41□□□□□ -0.58
SIX4-201ENST00000216513 TMEM177Q53S58 311 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 TMEM167AQ8TBQ9 72 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 ZNF25P17030 456 aaPredicted RBP11.41□□□□□ -0.58
SIX4-201ENST00000216513 SMAGPQ0VAQ4 97 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 TPTE2P1Q5T6R2 138 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 MYOZ3Q8TDC0 251 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 FAM215AQ9Y5M1 114 aa11.41□□□□□ -0.58
SIX4-201ENST00000216513 F11RQ9Y624 299 aaKnown RBP11.41□□□□□ -0.58
SIX4-201ENST00000216513 GOLGB1Q14789 3259 aaKnown RBP11.41□□□□□ -0.58
SIX4-201ENST00000216513 SRSF12Q8WXF0 261 aaKnown RBP11.4□□□□□ -0.58
SIX4-201ENST00000216513 DNAJC4Q9NNZ3 241 aa11.4□□□□□ -0.58
SIX4-201ENST00000216513 C1orf122Q6ZSJ8 110 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms