RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 DPM3Q9P2X0 92 aa13.9□□□□□ -0.18
PHGDH-234ENST00000642041 ONECUT1Q9UBC0 465 aa13.9□□□□□ -0.18
PHGDH-234ENST00000642041 RAB19A4D1S5 217 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 FNDC10F2Z333 226 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 MPDU1O75352 247 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 F2RL1P55085 397 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 SPANXN5Q5MJ07 72 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 OR4A47Q6IF82 309 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 HARBI1Q96MB7 349 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 PSMG3Q9BT73 122 aaPredicted RBP13.89□□□□□ -0.19
PHGDH-234ENST00000642041 LPAR2Q9HBW0 351 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 PARP11Q9NR21 331 aa13.89□□□□□ -0.19
PHGDH-234ENST00000642041 TBL2Q9Y4P3 447 aaKnown RBP13.89□□□□□ -0.19
PHGDH-234ENST00000642041 A0A1W2PPE3 182 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 MEX3AA1L020 520 aaKnown RBP13.88□□□□□ -0.19
PHGDH-234ENST00000642041 IGSF23A1L1A6 192 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 MBP02144 154 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 CD1BP29016 333 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 SUB1P53999 127 aaKnown RBP eCLIP13.88□□□□□ -0.19
PHGDH-234ENST00000642041 DVL1P1P54792 670 aaPredicted RBP13.88□□□□□ -0.19
PHGDH-234ENST00000642041 RPS16P62249 146 aaKnown RBP13.88□□□□□ -0.19
PHGDH-234ENST00000642041 FAM53AQ6NSI3 398 aaPredicted RBP13.88□□□□□ -0.19
PHGDH-234ENST00000642041 IL34Q6ZMJ4 242 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 LILRB2Q8N423 598 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 TMEM167AQ8TBQ9 72 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 JMJD8Q96S16 334 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 COMMD5Q9GZQ3 224 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 MS4A7Q9GZW8 240 aaPredicted RBP13.88□□□□□ -0.19
PHGDH-234ENST00000642041 NARFLQ9H6Q4 476 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 HEYLQ9NQ87 328 aaPredicted RBP13.88□□□□□ -0.19
PHGDH-234ENST00000642041 KCNIP2Q9NS61 270 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 TIMM9Q9Y5J7 89 aa13.88□□□□□ -0.19
PHGDH-234ENST00000642041 BTBD17A6NE02 478 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 IGHV3-7P01780 117 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 DYNLT3P51808 116 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 LGALS4P56470 323 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 OR2B8PP59922 312 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 ERHP84090 104 aaKnown RBP13.87□□□□□ -0.19
PHGDH-234ENST00000642041 MMD2Q8IY49 270 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 SLC7A5P1Q8MH63 180 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 LFNGQ8NES3 379 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 OR1L8Q8NGR8 309 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 SRSF8Q9BRL6 282 aaKnown RBP13.87□□□□□ -0.19
PHGDH-234ENST00000642041 TMEM147Q9BVK8 224 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 MRPL20Q9BYC9 149 aaKnown RBP13.87□□□□□ -0.19
PHGDH-234ENST00000642041 FBXO7Q9Y3I1 522 aa13.87□□□□□ -0.19
PHGDH-234ENST00000642041 IGHV2-70DA0A0C4DH43 119 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 C17orf112F2Z3M2 114 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 TMEM50AO95807 157 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 GATA3P23771 443 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 RPL8P62917 257 aaKnown RBP13.86□□□□□ -0.19
PHGDH-234ENST00000642041 PRCDQ00LT1 54 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 CLDND2Q8NHS1 167 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 TMED6Q8WW62 240 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 SMDT1Q9H4I9 107 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 PLEKHA3Q9HB20 300 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 TCF19Q9Y242 345 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 OR51B2Q9Y5P1 312 aa13.86□□□□□ -0.19
PHGDH-234ENST00000642041 ZNF705EA8MWA4 302 aaPredicted RBP13.85□□□□□ -0.19
PHGDH-234ENST00000642041 C22orf46C9J442 243 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 KRBOX1C9JBD0 128 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 LY6LH3BQJ8 138 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 CST7O76096 145 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 IFNA10P01566 189 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 OR9G9P0C7N8 305 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 HOXA1P49639 335 aaPredicted RBP13.85□□□□□ -0.19
PHGDH-234ENST00000642041 ARF6P62330 175 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 LRRC75BQ2VPJ9 315 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 COMMD7Q86VX2 200 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 MARC2Q969Z3 335 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 QTRT1Q9BXR0 403 aaKnown RBP13.85□□□□□ -0.19
PHGDH-234ENST00000642041 SMIM3Q9BZL3 60 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 UQCC1Q9NVA1 299 aa13.85□□□□□ -0.19
PHGDH-234ENST00000642041 IGHV1-3A0A0C4DH29 117 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 ACTL6BO94805 426 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 HBE1P02100 147 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 ARG1P05089 322 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 IAPPP10997 89 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 UBE2E1P51965 193 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 LMO4P61968 165 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 SLC38A11Q08AI6 406 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 FOXL1Q12952 345 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 RAB31Q13636 194 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 AKR1C8PQ5T2L2 129 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 PXDC1Q5TGL8 231 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 SSX9Q7RTT3 188 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 CENPVQ7Z7K6 275 aaPredicted RBP13.84□□□□□ -0.19
PHGDH-234ENST00000642041 PNKDQ8N490 385 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 ZNF709Q8N972 641 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 OR4P4Q8NGL7 312 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 MALSU1Q96EH3 234 aa13.84□□□□□ -0.19
PHGDH-234ENST00000642041 METTL15P1P0C7V9 234 aa13.83□□□□□ -0.2
PHGDH-234ENST00000642041 VDAC2P45880 294 aaPredicted RBP13.83□□□□□ -0.2
PHGDH-234ENST00000642041 DLK1P80370 383 aa13.83□□□□□ -0.2
PHGDH-234ENST00000642041 HABP2Q14520 560 aaPredicted RBP13.83□□□□□ -0.2
PHGDH-234ENST00000642041 CLINT1Q14677 625 aa13.83□□□□□ -0.2
PHGDH-234ENST00000642041 IZUMO4Q1ZYL8 232 aa13.83□□□□□ -0.2
PHGDH-234ENST00000642041 VWC2Q2TAL6 325 aa13.83□□□□□ -0.2
PHGDH-234ENST00000642041 TPTE2P1Q5T6R2 138 aa13.83□□□□□ -0.2
PHGDH-234ENST00000642041 C1orf229Q6ZS94 237 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms