RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C3orf22Q8N5N4 141 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 OR2A1Q8NGT9 310 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 ATRQ13535 2644 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PLXNC1O60486 1568 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 A0A087WV48 116 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PTGESO14684 152 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 CBLN1P23435 193 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 KLF5Q13887 457 aaPredicted RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 E9PQ18 207 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 HAX1O00165 279 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF324O75467 553 aaPredicted RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 Q6ZNB5 142 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 NEU4Q8WWR8 484 aaPredicted RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 WDR62O43379 1518 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 C3orf85A0A1B0GTC6 90 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM50BP56557 158 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 NANOS2P60321 138 aaKnown RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 WDR5P61964 334 aaKnown RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 C1orf220Q5T0J3 134 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 BVES-AS1Q5T3Y7 98 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 UNQ9370/PRO34162Q6UXP9 181 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 RHNO1Q9BSD3 238 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PLXNA1Q9UIW2 1896 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 SIPA1L3O60292 1781 aaPredicted RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 A0A1B0GTI1 187 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 A0A1W2PPM0 123 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 ARRDC5A6NEK1 342 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 RER1O15258 196 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 SS18L1O75177 396 aaPredicted RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 SERF1AO75920 110 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TROQ12816 1431 aaPredicted RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 RBAKDNA6NC62 111 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 HLA-DQB1P01920 261 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 RNF182Q8N6D2 247 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PZPP20742 1482 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 hADV29S1A0JD25 119 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 SNRPGP15A8MWD9 76 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 IGHV4-39P01824 125 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 ELANEP08246 267 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 C1QTNF8P60827 252 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 WFDC2Q14508 124 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TSKUQ8WUA8 353 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PPP1R1CQ8WVI7 109 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 KIAA1551Q9HCM1 1747 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 EHBP1L1Q8N3D4 1523 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 A0A1W2PR77 199 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 A8MWL6 223 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 NDUFC2-KCTD14E9PQ53 114 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 NDUFB2O95178 105 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM78Q5T7P6 136 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 C1orf174Q8IYL3 243 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 MOB4Q9Y3A3 225 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 COL6A5A8TX70 2615 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 GCN1Q92616 2671 aaKnown RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 FAM90A10PA6NDY2 464 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 FAM157CP0CG43 387 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM52BQ4KMG9 183 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 IL25Q9H293 177 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 HEXA-AS1Q9H8Q6 139 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM30AQ9NV96 361 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TAX1BP3O14907 124 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 NDUFB4O95168 129 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PFN1P07737 140 aaKnown RBP3□□□□□ -1.93
SCN1A-221ENST00000641996 CD164Q04900 197 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 PPP1R32Q7Z5V6 425 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 APCDD1LQ8NCL9 501 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 ARID2Q68CP9 1835 aa3□□□□□ -1.93
SCN1A-221ENST00000641996 TACSTD2P09758 323 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 CECR9P0C854 216 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 C8orf88P0DMB2 117 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 VDAC1P21796 283 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 FAM201AQ5SY85 155 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 RFLNAQ6ZTI6 216 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 OR2A5Q96R48 311 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 ZIC5Q96T25 663 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 DSPPQ9NZW4 1301 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 LAMB2P55268 1798 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TRAV41A0A0B4J266 112 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 GFERP55789 205 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 PDGFRLQ15198 375 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 PAPPA-AS1Q5QFB9 102 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 SPATA25Q9BR10 227 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 PTPRTO14522 1441 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 ABCA3Q99758 1704 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 PSPNO60542 156 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF740Q8NDX6 193 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 STAG3L4Q8TBR4 150 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 DLX4Q92988 240 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM202A6NGA9 273 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 IGF1P05019 195 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TEX36Q5VZQ5 186 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TEX43Q6ZNM6 134 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 V9GYH0 126 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 C17orf112F2Z3M2 114 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 PQLC2Q6ZP29 291 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TP53INP2Q8IXH6 220 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 FAM19A2Q8N3H0 131 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 MUCL1Q96DR8 90 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TAAR3PQ9P1P4 343 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 NESP48681 1621 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms