RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LINC00312Q9Y6C7 94 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 CEP192Q8TEP8 1941 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 ATP5LO75964 103 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 OSR1Q8TAX0 266 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-217ENST00000637988 RBKSQ9H477 322 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 MRPS18CQ9Y3D5 142 aaKnown RBP5.22□□□□□ -1.57
SCN1A-217ENST00000637988 LINC00587B1AMM8 73 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 STAG3L3P0CL85 134 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 LINC00305Q7Z4B0 112 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 DRAM1Q8N682 238 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 IGHV2OR16-5A0A0B4J2B6 119 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A26D6RGX4 464 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 IGHV3-11P01762 117 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 RPL35AP18077 110 aaKnown RBP5.21□□□□□ -1.57
SCN1A-217ENST00000637988 RPL29P47914 159 aaKnown RBP5.21□□□□□ -1.57
SCN1A-217ENST00000637988 CD81P60033 236 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 RPL24P83731 157 aaKnown RBP5.21□□□□□ -1.57
SCN1A-217ENST00000637988 SPSB2Q99619 263 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 LRRC37AA6NMS7 1700 aa5.21□□□□□ -1.57
SCN1A-217ENST00000637988 EFNB1P98172 346 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF585BQ52M93 769 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 ARL6IP6Q8N6S5 226 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 OR11H12B2RN74 326 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 ACP7Q6ZNF0 438 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 NRG4Q8WWG1 115 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 SRSF12Q8WXF0 261 aaKnown RBP5.21□□□□□ -1.58
SCN1A-217ENST00000637988 RCC2Q9P258 522 aaKnown RBP5.21□□□□□ -1.58
SCN1A-217ENST00000637988 IGHV3-49A0A0A0MS15 119 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 NPIPB8E9PQR5 432 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 NPIPB9F8W1W9 429 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 NPIPB7O75200 414 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 C8orf88P0DMB2 117 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 C2orf68Q2NKX9 166 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 OR4D5Q8NGN0 318 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 OR5P3Q8WZ94 311 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 SRXN1Q9BYN0 137 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 CECR9P0C854 216 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 GATA4P43694 442 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 LURAP1LQ8IV03 231 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 KIF26AQ9ULI4 1882 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-217ENST00000637988 TRAV34A0A0B4J273 112 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 GGCTO75223 188 aaKnown RBP5.21□□□□□ -1.58
SCN1A-217ENST00000637988 PEBP1P30086 187 aaKnown RBP5.21□□□□□ -1.58
SCN1A-217ENST00000637988 IFI27P40305 119 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-217ENST00000637988 WDR82Q6UXN9 313 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 LEAP2Q969E1 77 aa5.21□□□□□ -1.58
SCN1A-217ENST00000637988 FGF9P31371 208 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 OR10J3Q5JRS4 329 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 PEAR1Q5VY43 1037 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 RIMKLAQ8IXN7 391 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 Q96MF0 132 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 RNF167Q9H6Y7 350 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 HKR1P10072 659 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 HOXA5P20719 270 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 FBXL15Q9H469 300 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 SPTAN1Q13813 2472 aaKnown RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 TGIF2-C20orf24A0A0A6YYL0 155 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 CLEC18BQ6UXF7 455 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 GOLT1AQ6ZVE7 132 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 NEU3Q9UQ49 428 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 TRAV8-7A0A075B6U6 113 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 A0A1W2PPV9 198 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 F12P00748 615 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 MT-ND6P03923 174 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 EWSR1Q01844 656 aaKnown RBP eCLIP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 PAX8Q06710 450 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 LCNL1Q6ZST4 164 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 TCF23Q7RTU1 214 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 H1FOOQ8IZA3 346 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 SLC50A1Q9BRV3 221 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 IGHV3-35A0A0C4DH35 117 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 RAG2P55895 527 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 TTC9CQ8N5M4 171 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 ZNRF1Q8ND25 227 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 RNASEH2CQ8TDP1 164 aaKnown RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 FAM131CQ96AQ9 280 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 NAA50Q9GZZ1 169 aaKnown RBP5.2□□□□□ -1.58
SCN1A-217ENST00000637988 NPBWR2P48146 333 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 HOGA1Q86XE5 327 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 GATA6Q92908 595 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 AICDAQ9GZX7 198 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 JPT2Q9H910 190 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 TCRBV5S2A0A599 114 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 FABP2P12104 132 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 FMC1Q96HJ9 113 aa5.2□□□□□ -1.58
SCN1A-217ENST00000637988 CTDSPLO15194 276 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 SLC25A47Q6Q0C1 308 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 VCX2Q9H322 139 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 NAPSAO96009 420 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 IGHV3OR16-13A0A075B7E8 117 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 IGHV3-74A0A0B4J1X5 117 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 KBTBD11-OT1A0A1B0GTJ5 212 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 C22orf46C9J442 243 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 HLA-DRB1P01911 266 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 MINOS1Q5TGZ0 78 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 SIGLEC15Q6ZMC9 328 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 CYP2G1PQ6ZSU1 146 aa5.19□□□□□ -1.58
SCN1A-217ENST00000637988 FAM110DQ8TAY7 271 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-217ENST00000637988 GPR132Q9UNW8 380 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms