RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 LINC00310P59036 64 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 MRPL23Q16540 153 aaKnown RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 LPAL2Q16609 132 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 TBC1D28Q2M2D7 210 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 RHBDD2Q6NTF9 364 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 DUX4L9Q6RFH8 374 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 H1FXQ92522 213 aaKnown RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 MMABQ96EY8 250 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 ASCL2Q99929 193 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 TMEM167BQ9NRX6 74 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 AP5S1Q9NUS5 200 aa4.83□□□□□ -1.64
SCN1A-216ENST00000637968 DNAJB12Q9NXW2 375 aaKnown RBP4.83□□□□□ -1.64
SCN1A-216ENST00000637968 TMEM50AO95807 157 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 MOSP00540 346 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF415Q09FC8 603 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 OR1C1Q15619 314 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 IGFBP7Q16270 282 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 NNATQ16517 81 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 DEFB134Q4QY38 66 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 OR4C3Q8NH37 302 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 OR2H1Q9GZK4 316 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 POLDIP2Q9Y2S7 368 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 TRAV24A0A0B4J272 114 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 CENPVL3A0A0U1RRI6 287 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 C9JCJ5 164 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 BGLAPP02818 100 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 PLXDC1Q8IUK5 500 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF645Q8N7E2 425 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 FBXL15Q9H469 300 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 C1RLQ9NZP8 487 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 CASP8AP2Q9UKL3 1982 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 TRAV8-1A0A0A6YYK1 113 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 C9JAW5 83 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ACTL6BO94805 426 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ARL14EPLP0DKL9 152 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 GNG5P63218 68 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 PRDX1Q06830 199 aaKnown RBP4.82□□□□□ -1.64
SCN1A-216ENST00000637968 SGCBQ16585 318 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 Q6AWC8 147 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF793Q6ZN11 406 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ELSPBP1Q96BH3 223 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 RASL11BQ9BPW5 248 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 APOOQ9BUR5 198 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 LYRM4Q9HD34 91 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ALKBH4Q9NXW9 302 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 HIGD1AQ9Y241 93 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 GTF3C1Q12789 2109 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 A0A0A6YYD4 124 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 PPIFP30405 207 aaKnown RBP4.82□□□□□ -1.64
SCN1A-216ENST00000637968 HSD11B1LQ7Z5J1 315 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF414Q96IQ9 312 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 TP73-AS1Q9UF72 201 aa4.82□□□□□ -1.64
SCN1A-216ENST00000637968 TMSB15BA0A087X1C1 80 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 TRAV8-4A0A0B4J246 113 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 C21orf140B9A014 251 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 ATP5LO75964 103 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 NTF4P34130 210 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 LTBRP36941 435 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 OPRK1P41145 380 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 ASIPP42127 132 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 HBBP68871 147 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 AMTNQ6UX39 209 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 RDH5Q92781 318 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 ZDHHC16Q969W1 377 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 SLC25A33Q9BSK2 321 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 PDCD6O75340 191 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 OR2H2O95918 312 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 THBDP07204 575 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 SP1P08047 785 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 CELA2BP08218 269 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 CTLA4P16410 223 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 XGP55808 180 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 NMSQ5H8A3 153 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 LRRC75A-AS1Q8N1F1 130 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF114Q8NC26 417 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 KLF16Q9BXK1 252 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 RNASE7Q9H1E1 156 aaKnown RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 FNDC1Q4ZHG4 1894 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 C5orf49A4QMS7 147 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 C2orf70A6NJV1 201 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 LYPD3O95274 346 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 ZIC2O95409 532 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 RPS16P62249 146 aaKnown RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 QRFPP83859 136 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 MFAP5Q13361 173 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF146Q15072 292 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 IZUMO4Q1ZYL8 232 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 FNDC7Q5VTL7 733 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 IL1F10Q8WWZ1 152 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 MCRIP2Q9BUT9 160 aaKnown RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 FOXQ1Q9C009 403 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 IL36RNQ9UBH0 155 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 PIGLQ9Y2B2 252 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 TMEM213A2RRL7 107 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 C17orf51A8MQB3 221 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF137PP52743 207 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 RPL30P62888 115 aaKnown RBP4.81□□□□□ -1.64
SCN1A-216ENST00000637968 SPANXDQ9BXN6 97 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 NPCDR1Q9BY65 106 aa4.81□□□□□ -1.64
SCN1A-216ENST00000637968 CCL28Q9NRJ3 127 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms