RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 C15orf61A6NNL5 157 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 SRRM4A7MD48 611 aaKnown RBP7.75□□□□□ -1.17
CLN3-261ENST00000637686 FAM25EA8MYX2 175 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 INS-IGF2F8WCM5 200 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 UPK2O00526 184 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 FCN1O00602 326 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 CCSO14618 274 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 MED6O75586 246 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 KBTBD11O94819 623 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 HLA-DRB1P01911 266 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 C1QBP02746 253 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 SAA1P0DJI8 122 aaPredicted RBP7.75□□□□□ -1.17
CLN3-261ENST00000637686 LYL1P12980 280 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 PSMB6P28072 239 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 NKX2-1P43699 371 aaPredicted RBP7.75□□□□□ -1.17
CLN3-261ENST00000637686 CD83Q01151 205 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 PLGLAQ15195 96 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 PSG5Q15238 335 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 TREML4Q6UXN2 200 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 MMD2Q8IY49 270 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 OR4X2Q8NGF9 303 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 OR2T35Q8NGX2 323 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 OR5B3Q8NH48 314 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 FAM110DQ8TAY7 271 aaPredicted RBP7.75□□□□□ -1.17
CLN3-261ENST00000637686 PPP1R1CQ8WVI7 109 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 CLCC1Q96S66 551 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 SRSF8Q9BRL6 282 aaKnown RBP7.75□□□□□ -1.17
CLN3-261ENST00000637686 RANGRFQ9HD47 186 aaPredicted RBP7.75□□□□□ -1.17
CLN3-261ENST00000637686 HSPB7Q9UBY9 170 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 CACNG5Q9UF02 275 aa7.75□□□□□ -1.17
CLN3-261ENST00000637686 HMSDA8MTL9 139 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 ADARB2-AS1A8MUL3 147 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 MPTX1A8MV57 137 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 ST8SIA3O43173 380 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 SLC25A17O43808 307 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 SCAF4O95104 1147 aaKnown RBP7.74□□□□□ -1.17
CLN3-261ENST00000637686 MPC2O95563 127 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 IGF1P05019 195 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 SLC25A4P12235 298 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 ATP5IP56385 69 aaPredicted RBP7.74□□□□□ -1.17
CLN3-261ENST00000637686 TAS2R30P59541 319 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 SPCS3P61009 180 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 HSPE1P61604 102 aaKnown RBP7.74□□□□□ -1.17
CLN3-261ENST00000637686 RPL8P62917 257 aaKnown RBP7.74□□□□□ -1.17
CLN3-261ENST00000637686 SLC35B1P78383 322 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 NDPQ00604 133 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 TNFRSF9Q07011 255 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 TMEM65Q6PI78 240 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 Q6ZRM9 215 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 HSD17B13Q7Z5P4 300 aaPredicted RBP7.74□□□□□ -1.17
CLN3-261ENST00000637686 PPP1R27Q86WC6 154 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 OR4A16Q8NH70 328 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 OR1S1Q8NH92 325 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 HYLS1Q96M11 299 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 CIB3Q96Q77 187 aaPredicted RBP7.74□□□□□ -1.17
CLN3-261ENST00000637686 RAB40CQ96S21 281 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 PARP11Q9NR21 331 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 TPSG1Q9NRR2 321 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 TSSC4Q9Y5U2 329 aaPredicted RBP7.74□□□□□ -1.17
CLN3-261ENST00000637686 WSB1Q9Y6I7 421 aa7.74□□□□□ -1.17
CLN3-261ENST00000637686 G3V318 75 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 G3V3Q6 166 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 ATP6V0E1O15342 81 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 SIX6O95475 246 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 MBPP02686 304 aaPredicted RBP7.73□□□□□ -1.17
CLN3-261ENST00000637686 OPN1MWP04001 364 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 RLN2P04090 185 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 OR9G9P0C7N8 305 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 OPN1MW2P0DN77 364 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 OPN1MW3P0DN78 364 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 PVALBP20472 110 aaPredicted RBP7.73□□□□□ -1.17
CLN3-261ENST00000637686 CX3CL1P78423 397 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 PRSS8Q16651 343 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 KHDC1LQ5JSQ8 128 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 PRSS54Q6PEW0 395 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 TEX38Q6PEX7 206 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 MRPL41Q8IXM3 137 aaKnown RBP7.73□□□□□ -1.17
CLN3-261ENST00000637686 THAP6Q8TBB0 222 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 GON7Q9BXV9 100 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 FBXO7Q9Y3I1 522 aa7.73□□□□□ -1.17
CLN3-261ENST00000637686 TRAV14DV4A0A0A6YYC5 116 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 E5RGE8 158 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 K7EPK0 472 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 SYNGR2O43760 224 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 DEDDO75618 318 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 CA2P00918 260 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 EGR2P11161 476 aaPredicted RBP7.72□□□□□ -1.17
CLN3-261ENST00000637686 PRCDQ00LT1 54 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 CFHR3Q02985 330 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 RAB32Q13637 225 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 ZFP69Q49AA0 526 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 C11orf87Q6NUJ2 197 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 ZNF562Q6V9R5 426 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 LCNL1Q6ZST4 164 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 SSX9Q7RTT3 188 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 VKORC1L1Q8N0U8 176 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 COMMD1Q8N668 190 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 OR1L8Q8NGR8 309 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 ABHD5Q8WTS1 349 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 COMMD5Q9GZQ3 224 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms