RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SPIN2AQ99865 258 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 SPIN2BQ9BPZ2 258 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 RANGRFQ9HD47 186 aaPredicted RBP14.79□□□□□ -0.04
CLN3-260ENST00000637578 FLVCR2Q9UPI3 526 aa14.79□□□□□ -0.04
CLN3-260ENST00000637578 MARCH11A6NNE9 402 aa14.78□□□□□ -0.04
CLN3-260ENST00000637578 RBMXL2O75526 392 aaKnown RBP14.78□□□□□ -0.04
CLN3-260ENST00000637578 KRASP01116 189 aa14.78□□□□□ -0.04
CLN3-260ENST00000637578 OR4A47Q6IF82 309 aa14.78□□□□□ -0.04
CLN3-260ENST00000637578 ZNF343Q6P1L6 599 aa14.78□□□□□ -0.04
CLN3-260ENST00000637578 TTC9CQ8N5M4 171 aa14.78□□□□□ -0.04
CLN3-260ENST00000637578 AIFM2Q9BRQ8 373 aa14.78□□□□□ -0.04
CLN3-260ENST00000637578 COA4Q9NYJ1 87 aa14.78□□□□□ -0.04
CLN3-260ENST00000637578 TRBV9A0A0B4J1U6 114 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 B3GALNT1O75752 331 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 ACTL6BO94805 426 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 APELAP0DMC3 54 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 UCP1P25874 307 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 MAS1LP35410 378 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 G6PCP35575 357 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 ERVK-16P61578 105 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 SUPT4H1P63272 117 aaKnown RBP14.77□□□□□ -0.04
CLN3-260ENST00000637578 CENPSQ8N2Z9 138 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 DMBX1Q8NFW5 382 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 GLYATL2Q8WU03 294 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 B9D2Q9BPU9 175 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 TMEM222Q9H0R3 208 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 TMEM140Q9NV12 185 aa14.77□□□□□ -0.04
CLN3-260ENST00000637578 ZNF256Q9Y2P7 627 aaPredicted RBP14.77□□□□□ -0.04
CLN3-260ENST00000637578 TRIM16LQ309B1 348 aa14.77□□□□□ -0.05
CLN3-260ENST00000637578 C10orf55Q5SWW7 151 aa14.77□□□□□ -0.05
CLN3-260ENST00000637578 MZT2BQ6NZ67 158 aa14.77□□□□□ -0.05
CLN3-260ENST00000637578 GALNT14Q96FL9 552 aa14.77□□□□□ -0.05
CLN3-260ENST00000637578 PRR25Q96S07 402 aa14.77□□□□□ -0.05
CLN3-260ENST00000637578 DNAH9Q9NYC9 4486 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 TEX22C9J3V5 150 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 IL6RP08887 468 aaPredicted RBP14.76□□□□□ -0.05
CLN3-260ENST00000637578 ZP3P21754 424 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 KLF5Q13887 457 aaPredicted RBP14.76□□□□□ -0.05
CLN3-260ENST00000637578 TMEM128Q5BJH2 165 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 SLC25A42Q86VD7 318 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 SEC22AQ96IW7 307 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 C20orf85Q9H1P6 137 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 BET1LQ9NYM9 111 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 KCNIP3Q9Y2W7 256 aa14.76□□□□□ -0.05
CLN3-260ENST00000637578 TRAV3A0A0B4J244 114 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 FAM240BA0A1B0GVZ2 78 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 A0A1B0GW64 132 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 E7EUB6 86 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 SAP30O75446 220 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 TCRBP04435 133 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 OR4A5Q8NH83 315 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 LHFPL5Q8TAF8 219 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 PRR13Q9NZ81 148 aa14.75□□□□□ -0.05
CLN3-260ENST00000637578 PEF1Q9UBV8 284 aaKnown RBP14.75□□□□□ -0.05
CLN3-260ENST00000637578 COL7A1Q02388 2944 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 ANKRD34BA5PLL1 514 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 FAM223BA6NKX1 122 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 CDS2O95674 445 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 VAMP1P23763 118 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 DEFA5Q01523 94 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 DHODHQ02127 395 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 PPP1R1AQ13522 171 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 TMEM187Q14656 261 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 KLK9Q2XQG4 91 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 FAM223AQ8IWN6 122 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 NUDT15Q9NV35 164 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 KLK9Q9UKQ9 250 aa14.74□□□□□ -0.05
CLN3-260ENST00000637578 UPK2O00526 184 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 IGKV1-5P01602 117 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 FGF2P09038 288 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 ANXA7P20073 488 aaKnown RBP14.73□□□□□ -0.05
CLN3-260ENST00000637578 RPL27AP46776 148 aaKnown RBP14.73□□□□□ -0.05
CLN3-260ENST00000637578 DEFA1P59665 94 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 DEFA3P59666 94 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 RPL8P62917 257 aaKnown RBP14.73□□□□□ -0.05
CLN3-260ENST00000637578 ZNF257Q9Y2Q1 563 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 SORL1Q92673 2214 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 HMX3A6NHT5 357 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 NPIPB5A8MRT5 1133 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 TRBV12-3P01733 135 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 PRH1P02810 166 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 AKR1C2P52895 323 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 UBE2MP61081 183 aaKnown RBP14.73□□□□□ -0.05
CLN3-260ENST00000637578 RHOGP84095 191 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 CADM3Q8N126 398 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 NECAP1Q8NC96 275 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 ENKURQ8TC29 256 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 RBPMSQ93062 196 aaKnown RBP14.73□□□□□ -0.05
CLN3-260ENST00000637578 TMEM56Q96MV1 263 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 TMEM56-RWDD3S4R434 201 aa14.73□□□□□ -0.05
CLN3-260ENST00000637578 TRAV6A0A075B6T7 132 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 CGB1A6NKQ9 187 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 CRYGCP07315 174 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 ANXA3P12429 323 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 MYOD1P15172 320 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 HLA-GP17693 338 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 CD69Q07108 199 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 IZUMO4Q1ZYL8 232 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 TMEM268Q5VZI3 342 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 IL34Q6ZMJ4 242 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms