RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 SYNJ2BPP57105 145 aa12.05□□□□□ -0.48
LINC00339-207ENST00000634712 KLF5Q13887 457 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-207ENST00000634712 C19orf35Q6ZS72 473 aa12.05□□□□□ -0.48
LINC00339-207ENST00000634712 H2BFWTQ7Z2G1 175 aa12.05□□□□□ -0.48
LINC00339-207ENST00000634712 HSD17B13Q7Z5P4 300 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-207ENST00000634712 OR4A16Q8NH70 328 aa12.05□□□□□ -0.48
LINC00339-207ENST00000634712 PRR25Q96S07 402 aa12.05□□□□□ -0.48
LINC00339-207ENST00000634712 NXF2Q9GZY0 626 aaKnown RBP12.05□□□□□ -0.48
LINC00339-207ENST00000634712 THYN1Q9P016 225 aa12.05□□□□□ -0.48
LINC00339-207ENST00000634712 NSG2Q9Y328 171 aa12.05□□□□□ -0.48
LINC00339-207ENST00000634712 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.04□□□□□ -0.48
LINC00339-207ENST00000634712 CGB1A6NKQ9 187 aa12.04□□□□□ -0.48
LINC00339-207ENST00000634712 ATG12O94817 140 aa12.04□□□□□ -0.48
LINC00339-207ENST00000634712 PTBP1P26599 531 aaKnown RBP eCLIP12.04□□□□□ -0.48
LINC00339-207ENST00000634712 MECP2P51608 486 aaKnown RBP12.04□□□□□ -0.48
LINC00339-207ENST00000634712 MARCH1Q8TCQ1 289 aa12.04□□□□□ -0.48
LINC00339-207ENST00000634712 EEF1AKMT3Q96AZ1 226 aa12.04□□□□□ -0.48
LINC00339-207ENST00000634712 C14orf166Q9Y224 244 aaKnown RBP12.04□□□□□ -0.48
LINC00339-207ENST00000634712 C3orf85A0A1B0GTC6 90 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 IGLC7A0M8Q6 106 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 H0Y980 276 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 GSTZ1O43708 216 aaPredicted RBP12.03□□□□□ -0.48
LINC00339-207ENST00000634712 NDUFB8O95169 186 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 OR13C7P0DN81 318 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 FAAP20Q6NZ36 180 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 OR10W1Q8NGF6 305 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 OR9G4Q8NGQ1 327 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 OR13C8Q8NGS7 320 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 TMEM56Q96MV1 263 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 FANCD2OSQ96PS1 177 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 PEMTQ9UBM1 199 aa12.03□□□□□ -0.48
LINC00339-207ENST00000634712 IGHV3-23P01764 117 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 CTSDP07339 412 aaPredicted RBP12.02□□□□□ -0.49
LINC00339-207ENST00000634712 TRIM16LQ309B1 348 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 PYDC2Q56P42 97 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 SLC25A24Q6NUK1 477 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 OR4C16Q8NGL9 310 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 OR5B3Q8NH48 314 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 LSM10Q969L4 123 aaKnown RBP12.02□□□□□ -0.49
LINC00339-207ENST00000634712 MRGPRFQ96AM1 343 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 SEC22AQ96IW7 307 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 CXorf58Q96LI9 332 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 PRRT1Q99946 306 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 NDUFA4L2Q9NRX3 87 aa12.02□□□□□ -0.49
LINC00339-207ENST00000634712 SORL1Q92673 2214 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 IGLV11-55A0A075B6I3 123 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 TRBV7-1A0A0A6YYK4 115 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 TEX13DA0A0J9YY54 714 aaPredicted RBP12.01□□□□□ -0.49
LINC00339-207ENST00000634712 ANKRD20A5PA0PJZ0 165 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 C15orf61A6NNL5 157 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 ZNF701M0R085 212 aaPredicted RBP12.01□□□□□ -0.49
LINC00339-207ENST00000634712 BMPR1BO00238 502 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 GGCTO75223 188 aaKnown RBP12.01□□□□□ -0.49
LINC00339-207ENST00000634712 IGKV1-39P01597 117 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 IGKV1D-39P04432 117 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 AKR1C2P52895 323 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 CD69Q07108 199 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 CLEC19AQ6UXS0 136 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 TP53RKQ96S44 253 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 SOSTQ9BQB4 213 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 THAP7Q9BT49 309 aaPredicted RBP12.01□□□□□ -0.49
LINC00339-207ENST00000634712 TMEM14BQ9NUH8 114 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 SCP2D1Q9UJQ7 156 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 S4R3C0 116 aa12.01□□□□□ -0.49
LINC00339-207ENST00000634712 PPP5D1E7EU14 171 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 B3GALNT1O75752 331 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 SPNP16150 400 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 ARL3P36405 182 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 WT1-ASQ06250 92 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 SURF2Q15527 256 aaPredicted RBP12□□□□□ -0.49
LINC00339-207ENST00000634712 KLK9Q2XQG4 91 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 SP6Q3SY56 376 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 GDPD1Q8N9F7 314 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 OR51S1Q8NGJ8 323 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 RNASE11Q8TAA1 199 aaKnown RBP12□□□□□ -0.49
LINC00339-207ENST00000634712 SCGB3A2Q96PL1 93 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 RBM38Q9H0Z9 239 aaKnown RBP12□□□□□ -0.49
LINC00339-207ENST00000634712 MCUBQ9NWR8 336 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 KLK9Q9UKQ9 250 aa12□□□□□ -0.49
LINC00339-207ENST00000634712 OR2C1O95371 312 aa11.99□□□□□ -0.49
LINC00339-207ENST00000634712 GP9P14770 177 aa11.99□□□□□ -0.49
LINC00339-207ENST00000634712 FAUP35544 74 aaKnown RBP11.99□□□□□ -0.49
LINC00339-207ENST00000634712 OR1L6Q8NGR2 347 aa11.99□□□□□ -0.49
LINC00339-207ENST00000634712 RRNAD1Q96FB5 475 aaKnown RBP11.99□□□□□ -0.49
LINC00339-207ENST00000634712 IGLV1-51P01701 117 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 HLA-AP01891 365 aaKnown RBP11.98□□□□□ -0.49
LINC00339-207ENST00000634712 CLEC3BP05452 202 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 AP3S2P59780 193 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 HSPE1P61604 102 aaKnown RBP11.98□□□□□ -0.49
LINC00339-207ENST00000634712 FAM106AQ4KMX7 169 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 HAPLN4Q86UW8 402 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 Q8N402 240 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 CCDC140Q96MF4 163 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 B9D2Q9BPU9 175 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 RTBDNQ9BSG5 229 aaPredicted RBP11.98□□□□□ -0.49
LINC00339-207ENST00000634712 PDCD10Q9BUL8 212 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 GPR132Q9UNW8 380 aa11.98□□□□□ -0.49
LINC00339-207ENST00000634712 LSM4Q9Y4Z0 139 aaKnown RBP11.98□□□□□ -0.49
LINC00339-207ENST00000634712 F11RQ9Y624 299 aaKnown RBP11.98□□□□□ -0.49
LINC00339-207ENST00000634712 MFSD2BA6NFX1 497 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms