RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 UPK2O00526 184 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 CCKARP32238 428 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 PRCDQ00LT1 54 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 PRSS8Q16651 343 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 TEX36Q5VZQ5 186 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 SGMS2Q8NHU3 365 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 OCC1Q8TAD7 63 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 TMEM18Q96B42 140 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 SLC45A2Q9UMX9 530 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 TRAPPC1Q9Y5R8 145 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 TET2Q6N021 2002 aaPredicted RBP10.45□□□□□ -0.74
LINC00540-203ENST00000631321 CT45A6P0DMU7 189 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 CT45A5P0DMU8 189 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 CT45A7P0DMV0 189 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 IGFBP2P18065 325 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 CEACAM8P31997 349 aaPredicted RBP10.45□□□□□ -0.74
LINC00540-203ENST00000631321 YPEL3P61236 119 aaPredicted RBP10.45□□□□□ -0.74
LINC00540-203ENST00000631321 GBGT1Q8N5D6 347 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 OR10G8Q8NGN5 311 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 TNFSF4P23510 183 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 CCL13Q99616 98 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 OTOGLQ3ZCN5 2332 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 DSPP15924 2871 aaKnown RBP10.44□□□□□ -0.74
LINC00540-203ENST00000631321 J3QR06 171 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 FOXH1O75593 365 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 MMP23AO75900 390 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 MYOD1P15172 320 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 RPL31P62899 125 aaKnown RBP10.44□□□□□ -0.74
LINC00540-203ENST00000631321 RTL8BQ17RB0 113 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 NUP37Q8NFH4 326 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 UHRF2Q96PU4 802 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 PLEKHA3Q9HB20 300 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 CADP27708 2225 aa10.44□□□□□ -0.74
LINC00540-203ENST00000631321 SRRM4A7MD48 611 aaKnown RBP10.43□□□□□ -0.74
LINC00540-203ENST00000631321 K7EN84 100 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 CD40P25942 277 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 C2orf83Q53S99 150 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 PNKDQ8N490 385 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 FAM216BQ8N7L0 139 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 OR4P4Q8NGL7 312 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 SLC35E1Q96K37 410 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 PRO1933Q9H354 126 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 SLC35D1Q9NTN3 355 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 BET1LQ9NYM9 111 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 DSCAMO60469 2012 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 A0A087X0M5 115 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 A0A1B0GX30 115 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 GNG10P50151 68 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 C22orf34Q6ZV56 151 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 DEFB108BQ8NET1 73 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 NOL4LQ96MY1 436 aaPredicted RBP10.43□□□□□ -0.74
LINC00540-203ENST00000631321 FKBP11Q9NYL4 201 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 IL36BQ9NZH7 164 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 LINC00312Q9Y6C7 94 aa10.43□□□□□ -0.74
LINC00540-203ENST00000631321 TEX50A0A1B0GTY4 177 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 hADV38S2A0JD32 116 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 A8MXE2 369 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 IGKV1-16P04430 117 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 ZNF833PQ6ZTB9 187 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 MIR17HGQ75NE6 70 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 OR1L8Q8NGR8 309 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 OR5B3Q8NH48 314 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 C19orf24Q9BVV8 132 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 TMEM167BQ9NRX6 74 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 TP53TG5Q9Y2B4 290 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 DSCAML1Q8TD84 2053 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 CRYABP02511 175 aaKnown RBP10.42□□□□□ -0.74
LINC00540-203ENST00000631321 FAM27E3Q08E93 113 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 ZNF664Q8N3J9 261 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 EAF1Q96JC9 268 aaPredicted RBP10.42□□□□□ -0.74
LINC00540-203ENST00000631321 NABP2Q9BQ15 211 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 HINT2Q9BX68 163 aa10.42□□□□□ -0.74
LINC00540-203ENST00000631321 ZFHX4Q86UP3 3567 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 IGKV1OR2-108A0A075B7D4 117 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 A8MWP6 167 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 SELENOTP62341 195 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 HLA-DRB5Q30154 266 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 UNQ6494/PRO21346Q6UXR6 183 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 RBMXL3Q8N7X1 1067 aaKnown RBP10.41□□□□□ -0.74
LINC00540-203ENST00000631321 NBEAQ8NFP9 2946 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 INS-IGF2F8WCM5 200 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 OR5G3P0C626 314 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 SAA1P0DJI8 122 aaPredicted RBP10.41□□□□□ -0.74
LINC00540-203ENST00000631321 RNASE2P10153 161 aaKnown RBP10.41□□□□□ -0.74
LINC00540-203ENST00000631321 IRF2P14316 349 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 MEF2CQ06413 473 aaPredicted RBP10.41□□□□□ -0.74
LINC00540-203ENST00000631321 OSR1Q8TAX0 266 aaPredicted RBP10.41□□□□□ -0.74
LINC00540-203ENST00000631321 FAM57AQ8TBR7 257 aa10.41□□□□□ -0.74
LINC00540-203ENST00000631321 TECRQ9NZ01 308 aaKnown RBP10.41□□□□□ -0.74
LINC00540-203ENST00000631321 OR10J4P0C629 311 aa10.4□□□□□ -0.74
LINC00540-203ENST00000631321 COL8A2P25067 703 aa10.4□□□□□ -0.74
LINC00540-203ENST00000631321 PQLC2Q6ZP29 291 aa10.4□□□□□ -0.74
LINC00540-203ENST00000631321 MRPL41Q8IXM3 137 aaKnown RBP10.4□□□□□ -0.74
LINC00540-203ENST00000631321 ZNF503Q96F45 646 aa10.4□□□□□ -0.74
LINC00540-203ENST00000631321 LRFN3Q9BTN0 628 aa10.4□□□□□ -0.74
LINC00540-203ENST00000631321 DCAF16Q9NXF7 216 aa10.4□□□□□ -0.74
LINC00540-203ENST00000631321 NKX6-3A6NJ46 265 aa10.39□□□□□ -0.75
LINC00540-203ENST00000631321 OR4A8P0C604 315 aa10.39□□□□□ -0.75
LINC00540-203ENST00000631321 HNF1AP20823 631 aa10.39□□□□□ -0.75
LINC00540-203ENST00000631321 ADMP35318 185 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms