RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NDUFB3O43676 98 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 CA2P00918 260 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 MT-ND4LP03901 98 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 C1orf87Q8N0U7 546 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 OR10W1Q8NGF6 305 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 UNKLQ9H9P5 680 aaKnown RBP8.67□□□□□ -1.02
CUX1-221ENST00000622516 CELSR1Q9NYQ6 3014 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 IGHV3-72A0A0B4J1Y9 119 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 PAGE4O60829 102 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 CD3EP07766 207 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 CENPVQ7Z7K6 275 aaPredicted RBP8.67□□□□□ -1.02
CUX1-221ENST00000622516 OR5T1Q8NG75 326 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 OR4F5Q8NH21 305 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 CORO2AQ92828 525 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 OR4F4Q96R69 305 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 MGST2Q99735 147 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 PARD6GQ9BYG4 376 aaPredicted RBP8.67□□□□□ -1.02
CUX1-221ENST00000622516 NGBQ9NPG2 151 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 AURKAIP1Q9NWT8 199 aaPredicted RBP8.67□□□□□ -1.02
CUX1-221ENST00000622516 VAX2Q9UIW0 290 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 TIMM9Q9Y5J7 89 aa8.67□□□□□ -1.02
CUX1-221ENST00000622516 CTXND1A0A1B0GTU2 59 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 C1orf196B1AJZ1 125 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 HSBP1L1C9JCN9 74 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 E7EUB6 86 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 J3QR06 171 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 CXCL1P09341 107 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 CHRNB4P30926 498 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 HSPE1P61604 102 aaKnown RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 MEF2BQ02080 365 aaPredicted RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 VWC2Q2TAL6 325 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 LRRC10Q5BKY1 277 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 ARSJQ5FYB0 599 aaPredicted RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 OR51G1Q8NGK1 321 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 OR10X1Q8NGY0 326 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 C1orf159Q96HA4 380 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 DIRC2Q96SL1 478 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 ACTR3CQ9C0K3 210 aaPredicted RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 GAL3ST2Q9H3Q3 398 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 RAB9BQ9NP90 201 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 WDR83OSQ9Y284 106 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 TGIF2-C20orf24A0A0A6YYL0 155 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 IGHV1-69-2A0A0G2JMI3 117 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 SAA1P0DJI8 122 aaPredicted RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 MDKP21741 143 aaPredicted RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 KIR2DS2P43631 304 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 RPS10P46783 165 aaKnown RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 PDLIM3Q53GG5 364 aaPredicted RBP8.66□□□□□ -1.02
CUX1-221ENST00000622516 HEPN1Q6WQI6 88 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 SLC24A4Q8NFF2 622 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 ENY2Q9NPA8 101 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 TMEM14BQ9NUH8 114 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 PKD1L2Q7Z442 2459 aa8.66□□□□□ -1.02
CUX1-221ENST00000622516 CACNA1BQ00975 2339 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 PRSS46E5RG02 174 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 YIF1AO95070 293 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 HRASP01112 189 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 IGHV3-48P01763 117 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 NPY1RP25929 384 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 APOBEC3AP31941 199 aaPredicted RBP8.65□□□□□ -1.02
CUX1-221ENST00000622516 CDC34P49427 236 aaPredicted RBP8.65□□□□□ -1.02
CUX1-221ENST00000622516 CLEC12BQ2HXU8 276 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 Q8WTZ3 238 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 C14orf144Q96I85 54 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 RITA1Q96K30 269 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 HARBI1Q96MB7 349 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 C17orf112F2Z3M2 114 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 ITGB1BP1O14713 200 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 GATA2P23769 480 aaPredicted RBP8.65□□□□□ -1.02
CUX1-221ENST00000622516 LOXP28300 417 aaPredicted RBP8.65□□□□□ -1.02
CUX1-221ENST00000622516 FABP9Q0Z7S8 132 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 LY6DQ14210 128 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 RTL8BQ17RB0 113 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 MUC15Q8N387 334 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.65□□□□□ -1.02
CUX1-221ENST00000622516 OR52E5Q8NH55 327 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 SMIM7Q9BQ49 75 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 LINC00574Q9H8X3 128 aa8.65□□□□□ -1.02
CUX1-221ENST00000622516 A0A1W2PPV4 95 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 APELAP0DMC3 54 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 PSMB3P49720 205 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 ADIRFQ15847 76 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 C10orf55Q5SWW7 151 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 CST9LP1Q5W188 147 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 WDR25Q64LD2 544 aaPredicted RBP8.64□□□□□ -1.03
CUX1-221ENST00000622516 TUBA4BQ9H853 241 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 FOXA2Q9Y261 457 aaPredicted RBP8.64□□□□□ -1.03
CUX1-221ENST00000622516 PXMP4Q9Y6I8 212 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 TEX50A0A1B0GTY4 177 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 FAM90A9PA6NNJ1 464 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 CYB5BO43169 146 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 ACTL6BO94805 426 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 CA7P43166 264 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 ELOBQ15370 118 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 ACOT6Q3I5F7 207 aaPredicted RBP8.64□□□□□ -1.03
CUX1-221ENST00000622516 SPATA31B1PQ5VZV4 182 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 SLC35E3Q7Z769 313 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 NECAP1Q8NC96 275 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 ABHD5Q8WTS1 349 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 IGFBPL1Q8WX77 278 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms