RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 MAJINQ3KP22 176 aa17.38■□□□□ 0.37
LIME1-210ENST00000621325 ZNF787Q6DD87 383 aa17.38■□□□□ 0.37
LIME1-210ENST00000621325 CENPVQ7Z7K6 275 aaPredicted RBP17.38■□□□□ 0.37
LIME1-210ENST00000621325 SVIPQ8NHG7 77 aa17.38■□□□□ 0.37
LIME1-210ENST00000621325 TNCP24821 2201 aa17.38■□□□□ 0.37
LIME1-210ENST00000621325 SRP19P09132 144 aaKnown RBP17.37■□□□□ 0.37
LIME1-210ENST00000621325 COL8A2P25067 703 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 PDLIM3Q53GG5 364 aaPredicted RBP17.37■□□□□ 0.37
LIME1-210ENST00000621325 ZNF506Q5JVG8 444 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 ZNF429Q86V71 674 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 MBD3L1Q8WWY6 194 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 MRPL20Q9BYC9 149 aaKnown RBP17.37■□□□□ 0.37
LIME1-210ENST00000621325 SLC35D1Q9NTN3 355 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 TIMM9Q9Y5J7 89 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 REG1BP48304 166 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 SOHLH1Q5JUK2 328 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 BEND2Q8NDZ0 799 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 OR10A7Q8NGE5 316 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 OR13D1Q8NGV5 346 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 NPCDR1Q9BY65 106 aa17.37■□□□□ 0.37
LIME1-210ENST00000621325 DIAPH2-AS1Q14236 149 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 ZNF833PQ6ZTB9 187 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 KAAG1Q9UBP8 84 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 A6NNC1 897 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 PPP1R2P9O14990 202 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 HMGB3O15347 200 aaKnown RBP17.36■□□□□ 0.37
LIME1-210ENST00000621325 MDKP21741 143 aaPredicted RBP17.36■□□□□ 0.37
LIME1-210ENST00000621325 ZNF672Q499Z4 452 aaPredicted RBP17.36■□□□□ 0.37
LIME1-210ENST00000621325 CYB561D1Q8N8Q1 229 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 SMDT1Q9H4I9 107 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 TMEM14BQ9NUH8 114 aa17.36■□□□□ 0.37
LIME1-210ENST00000621325 ZFP92A6NM28 416 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BKO60814 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BJP06899 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 TMEM11P17152 192 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BOP23527 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BBP33778 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BDP58876 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 CD81P60033 236 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BCP62807 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST2H2BEQ16778 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.35■□□□□ 0.37
LIME1-210ENST00000621325 DMRTA1Q5VZB9 504 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BHQ93079 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BNQ99877 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 HIST1H2BMQ99879 126 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 DCHS2Q6V1P9 2916 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 LOC102723971A0A1B0GUV8 181 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 MAP1LC3B2A6NCE7 125 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 DEFA4P12838 97 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 DLX6P56179 175 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 MAP1LC3BQ9GZQ8 125 aa17.35■□□□□ 0.37
LIME1-210ENST00000621325 FOXA2Q9Y261 457 aaPredicted RBP17.35■□□□□ 0.37
LIME1-210ENST00000621325 PUS1Q9Y606 427 aaKnown RBP eCLIP17.35■□□□□ 0.37
LIME1-210ENST00000621325 HRASP01112 189 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 OPN1MWP04001 364 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 OPN1MW2P0DN77 364 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 OPN1MW3P0DN78 364 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 POU2AF1Q16633 256 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 FFAR4Q5NUL3 377 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 Q8N7P7 452 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 OR5R1Q8NH85 324 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 YPEL4Q96NS1 127 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 SLC25A22Q9H936 323 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 SPTBN1Q01082 2364 aaKnown RBP17.34■□□□□ 0.37
LIME1-210ENST00000621325 ITPR1Q14643 2758 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 PIEZO1Q92508 2521 aa17.34■□□□□ 0.37
LIME1-210ENST00000621325 PRSS46E5RG02 174 aa17.33■□□□□ 0.37
LIME1-210ENST00000621325 CD1BP29016 333 aa17.33■□□□□ 0.37
LIME1-210ENST00000621325 HSPE1P61604 102 aaKnown RBP17.33■□□□□ 0.37
LIME1-210ENST00000621325 RTL8BQ17RB0 113 aa17.33■□□□□ 0.37
LIME1-210ENST00000621325 NOL4LQ96MY1 436 aaPredicted RBP17.33■□□□□ 0.37
LIME1-210ENST00000621325 HINT2Q9BX68 163 aa17.33■□□□□ 0.37
LIME1-210ENST00000621325 MALRD1Q5VYJ5 2156 aa17.33■□□□□ 0.36
LIME1-210ENST00000621325 HSPB1P04792 205 aaKnown RBP17.33■□□□□ 0.36
LIME1-210ENST00000621325 DLX1P56177 255 aa17.33■□□□□ 0.36
LIME1-210ENST00000621325 TMEM155Q4W5P6 130 aa17.33■□□□□ 0.36
LIME1-210ENST00000621325 SMCO3A2RU48 225 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 ZNF674Q2M3X9 581 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 PACRGQ96M98 296 aaPredicted RBP17.32■□□□□ 0.36
LIME1-210ENST00000621325 WDR83OSQ9Y284 106 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 OR51B2Q9Y5P1 312 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 J3QR06 171 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 LY6HO94772 140 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 OR2C1O95371 312 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 IL6RP08887 468 aaPredicted RBP17.32■□□□□ 0.36
LIME1-210ENST00000621325 LINC00614P0C842 121 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 MAS1LP35410 378 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 PRB3Q04118 309 aaPredicted RBP17.32■□□□□ 0.36
LIME1-210ENST00000621325 ETFRF1Q6IPR1 90 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 C11orf42Q8N5U0 333 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 OR10X1Q8NGY0 326 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 SLC39A9Q9NUM3 307 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 HIVEP3Q5T1R4 2406 aa17.32■□□□□ 0.36
LIME1-210ENST00000621325 BCL2P10415 239 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 ZNF709Q8N972 641 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 OR10G4Q8NGN3 311 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 OR10G9Q8NGN4 311 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 OR10G7Q8NGN6 311 aa17.31■□□□□ 0.36
LIME1-210ENST00000621325 LHX4Q969G2 390 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms