RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GFRA1P56159 465 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 LCN2P80188 198 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 ACSF3Q4G176 576 aaPredicted RBP11.8□□□□□ -0.52
CPSF1-212ENST00000616140 MRPL32Q9BYC8 188 aaKnown RBP11.8□□□□□ -0.52
CPSF1-212ENST00000616140 NOTCH2Q04721 2471 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 LHX2P50458 406 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 LINC00305Q7Z4B0 112 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 OSR1Q8TAX0 266 aaPredicted RBP11.8□□□□□ -0.52
CPSF1-212ENST00000616140 COL25A1Q9BXS0 654 aaPredicted RBP11.8□□□□□ -0.52
CPSF1-212ENST00000616140 A0A0G2JMZ2 1700 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 LRRC37A2A6NM11 1700 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 IGHV2OR16-5A0A0B4J2B6 119 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 K7ERU9 68 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 NBEAP1P0C6P0 100 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 FOLR2P14207 255 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 GATA2P23769 480 aaPredicted RBP11.8□□□□□ -0.52
CPSF1-212ENST00000616140 FGFBP3Q8TAT2 258 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 METTL26Q96S19 204 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 IMMP2LQ96T52 175 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 SDF2L1Q9HCN8 221 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 RALYQ9UKM9 306 aaKnown RBP11.8□□□□□ -0.52
CPSF1-212ENST00000616140 IGKV1-12A0A0C4DH73 117 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 IGKV1D-12P01611 117 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 ID3Q02535 119 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 IFI27L2Q9H2X8 130 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 SCN5AQ14524 2016 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 IGHV3OR16-13A0A075B7E8 117 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 IGHV3-74A0A0B4J1X5 117 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 SCO2A0A1W2PP80 73 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 PRR19A6NJB7 356 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 M0R3E3 92 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 FGF16O43320 207 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 C12orf54Q6X4T0 127 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 SIAH2O43255 324 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 CD55P08174 381 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 ZNF883P0CG24 379 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 GPX4P36969 197 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-212ENST00000616140 MBNL2Q5VZF2 373 aaKnown RBP11.79□□□□□ -0.52
CPSF1-212ENST00000616140 FAM208BQ5VWN6 2430 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 LIPFP07098 398 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 SLC25A34Q6PIV7 304 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 DOCK9Q9BZ29 2069 aa11.79□□□□□ -0.52
CPSF1-212ENST00000616140 FOXG1P55316 489 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-212ENST00000616140 ZIC4Q8N9L1 334 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 C18orf12Q96KH6 178 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 ACACBO00763 2458 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 KBTBD11-OT1A0A1B0GTJ5 212 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 MPZP25189 248 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 TM4SF20Q53R12 229 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 CLEC2AQ6UVW9 174 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 PET117Q6UWS5 81 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 OR10J6PQ8NGY7 276 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 TMEM106BQ9NUM4 274 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 TRAV24A0A0B4J272 114 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 CCL20P78556 96 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 ICAM4Q14773 271 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 KCNS1Q96KK3 526 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 FBXL15Q9H469 300 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 TRBV9A0A0B4J1U6 114 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 ZNF207O43670 478 aaKnown RBP11.78□□□□□ -0.52
CPSF1-212ENST00000616140 SUPT4H1P63272 117 aaKnown RBP11.78□□□□□ -0.52
CPSF1-212ENST00000616140 LHFPL1Q86WI0 220 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 ATG101Q9BSB4 218 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 TUBA4BQ9H853 241 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 GSN-AS1Q9NRJ2 163 aa11.78□□□□□ -0.52
CPSF1-212ENST00000616140 TRAV30A0A087WSZ9 112 aa11.77□□□□□ -0.52
CPSF1-212ENST00000616140 HLA-DRB1P01911 266 aa11.77□□□□□ -0.52
CPSF1-212ENST00000616140 ID1P41134 155 aa11.77□□□□□ -0.52
CPSF1-212ENST00000616140 C9orf106Q8NAJ2 232 aa11.77□□□□□ -0.52
CPSF1-212ENST00000616140 C1orf162Q8NEQ5 155 aaPredicted RBP11.77□□□□□ -0.52
CPSF1-212ENST00000616140 OR1N2Q8NGR9 330 aa11.77□□□□□ -0.52
CPSF1-212ENST00000616140 LINC01560Q8TB33 94 aa11.77□□□□□ -0.52
CPSF1-212ENST00000616140 WDYHV1Q96HA8 205 aa11.77□□□□□ -0.52
CPSF1-212ENST00000616140 PTPRQQ9UMZ3 2332 aa11.77□□□□□ -0.53
CPSF1-212ENST00000616140 A0A087WWC5 75 aa11.77□□□□□ -0.53
CPSF1-212ENST00000616140 IQCF6A8MYZ5 107 aa11.77□□□□□ -0.53
CPSF1-212ENST00000616140 C9orf172C9J069 976 aa11.77□□□□□ -0.53
CPSF1-212ENST00000616140 OR10AG1Q8NH19 301 aa11.77□□□□□ -0.53
CPSF1-212ENST00000616140 MRPS18CQ9Y3D5 142 aaKnown RBP11.77□□□□□ -0.53
CPSF1-212ENST00000616140 CRYGSP22914 178 aa11.77□□□□□ -0.53
CPSF1-212ENST00000616140 RPL23P62829 140 aaKnown RBP11.77□□□□□ -0.53
CPSF1-212ENST00000616140 S4R3C0 116 aa11.77□□□□□ -0.53
CPSF1-212ENST00000616140 GAGE10A6NGK3 116 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 NPIPB11E5RHQ5 1161 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 TFF1P04155 84 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 DYNLRB2Q8TF09 96 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 LOC105371242A0A075B767 164 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 A0A1B0GV90 55 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 DPRXA6NFQ7 191 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 HOXA5P20719 270 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 ANOS1P23352 680 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 RNFT1Q5M7Z0 435 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 TCF24Q7RTU0 167 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 GTF3AQ92664 365 aaKnown RBP11.76□□□□□ -0.53
CPSF1-212ENST00000616140 B9A039 149 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 LDLRAD4O15165 306 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 RAMP3O60896 148 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 GCSHP23434 173 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 HBBP68871 147 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 ARTNQ5T4W7 220 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms