RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 TRAV8-6A0A0B4J262 113 aa4.24□□□□□ -1.73
VPS13D-213ENST00000613099 A0A1B0GUT8 65 aa4.24□□□□□ -1.73
VPS13D-213ENST00000613099 LGALS3P17931 250 aaKnown RBP4.24□□□□□ -1.73
VPS13D-213ENST00000613099 TSKUQ8WUA8 353 aa4.24□□□□□ -1.73
VPS13D-213ENST00000613099 PPIL1Q9Y3C6 166 aa4.24□□□□□ -1.73
VPS13D-213ENST00000613099 KCNE3Q9Y6H6 103 aa4.24□□□□□ -1.73
VPS13D-213ENST00000613099 FNDC7Q5VTL7 733 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 C10orf113Q5VZT2 155 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 LRTM2Q8N967 370 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 PAPPA-AS1Q5QFB9 102 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 LAMTOR3Q9UHA4 124 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 TIMP3P35625 211 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 RGRP47804 291 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 TMEM258P61165 79 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 S100A7L2Q5SY68 101 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 BAHD1Q8TBE0 780 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 CLEC7AQ9BXN2 247 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 LILRA5A6NI73 299 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 F11P03951 625 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 SP7Q8TDD2 431 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 RDH5Q92781 318 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 IGLC7A0M8Q6 106 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 C1QL3Q5VWW1 255 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 SNRNP40Q96DI7 357 aaKnown RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 DUX5Q96PT3 197 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 NKX2-2O95096 273 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 H3BML4 177 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 CFIP05156 583 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 C6orf15Q6UXA7 325 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 C8orf86Q6ZUL3 223 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 ZNF740Q8NDX6 193 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 J3QRE1 110 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 METRNLQ641Q3 311 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 ASCL5Q7RTU5 278 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 SSMEM1Q8WWF3 244 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 VOPP1Q96AW1 172 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 PRELID3AQ96N28 172 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 PLA2G3Q9NZ20 509 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 FREM3P0C091 2139 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 PPP1R27Q86WC6 154 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 ABHD17AQ96GS6 310 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 DUSP15Q9H1R2 295 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 ATG2BQ96BY7 2078 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 A0A1W2PRE2 83 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 YPEL3P61236 119 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 WDR31Q8NA23 367 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 BEX4Q9NWD9 120 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 SP9P0CG40 484 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 ZNF816Q0VGE8 651 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 ZDHHC23Q8IYP9 409 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 WNK1Q9H4A3 2382 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 CD33P20138 364 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 ACP1P24666 158 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 S100A4P26447 101 aaKnown RBP4.23□□□□□ -1.73
VPS13D-213ENST00000613099 SPEM1Q8N4L4 309 aa4.23□□□□□ -1.73
VPS13D-213ENST00000613099 FABP5P3A8MUU1 101 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 DNAL4O96015 105 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 ZNF718Q3SXZ3 478 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 TMEM155Q4W5P6 130 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 TM4SF20Q53R12 229 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 FAM110AQ9BQ89 295 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 IL23AQ9NPF7 189 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 DOCK6Q96HP0 2047 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 PTPRQQ9UMZ3 2332 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 A0A1W2PQF6 199 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 APOHP02749 345 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 ATP5G1P05496 136 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 DRD3P35462 400 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 ATP5G3P48201 142 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 ATP5G2Q06055 141 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 TMEM178AQ8NBL3 297 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 NFAM1Q8NET5 270 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 HIGD1CA8MV81 97 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 RRHO14718 337 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 SMAD7O15105 426 aaKnown RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 CX3CL1P78423 397 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 ZNF658BQ4V348 819 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 SH2D7A6NKC9 451 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 KIR3DL3Q8N743 410 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 MOB4Q9Y3A3 225 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 C21orf140B9A014 251 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 LGALS7P47929 136 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 ORMDL3Q8N138 153 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 TNRC6AQ8NDV7 1962 aaKnown RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 PGLYRP1O75594 196 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 CLDN17P56750 224 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 AAED1Q7RTV5 226 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 LTBP1Q14766 1721 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 UPK3AO75631 287 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 LGALS4P56470 323 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 CXCL17Q6UXB2 119 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 CNRIP1Q96F85 164 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-213ENST00000613099 RNF115Q9Y4L5 304 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 IGLV3-16A0A075B6K0 115 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 IGLV3-25P01717 112 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 IGHG4P01861 327 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 OR2H1Q9GZK4 316 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 FAM234AQ9H0X4 552 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 FBXL7Q9UJT9 491 aa4.22□□□□□ -1.73
VPS13D-213ENST00000613099 FAM106CPP0CH98 169 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms