RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 C11orf94C9JXX5 98 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 ANKRD65E5RJM6 399 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 K7EMT4 169 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 M0R036 132 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 FGF16O43320 207 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 ATP8B1O43520 1251 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 SLC16A7O60669 478 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 HPGDSO60760 199 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 IFNA5P01569 189 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 CD3GP09693 182 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 OR5AL1P0C617 328 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 HIST1H1CP16403 213 aaKnown RBP3.04□□□□□ -1.92
LINC00540-201ENST00000611481 HRH1P35367 487 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 FUSP35637 526 aaKnown RBP eCLIP3.04□□□□□ -1.92
LINC00540-201ENST00000611481 SERPINB5P36952 375 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 GUCA1AP43080 201 aaPredicted RBP3.04□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF133P52736 654 aaPredicted RBP3.04□□□□□ -1.92
LINC00540-201ENST00000611481 DLX6P56179 175 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 RAP1BP61224 184 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 HBA1P69905 142 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 CD47Q08722 323 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 PDZD11Q5EBL8 140 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 LCN8Q6JVE9 175 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 FAAP20Q6NZ36 180 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 CNIH2Q6PI25 160 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 DRAM2Q6UX65 266 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 WDR86Q86TI4 376 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 ENTHD1Q8IYW4 607 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 OR5D18Q8NGL1 313 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 OR4P4Q8NGL7 312 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 OR2T27Q8NH04 317 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 APH1BQ8WW43 257 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 CHCHD10Q8WYQ3 142 aaPredicted RBP3.04□□□□□ -1.92
LINC00540-201ENST00000611481 SGTBQ96EQ0 304 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF414Q96IQ9 312 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 KCTD7Q96MP8 289 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 OPRPNQ99935 248 aaPredicted RBP3.04□□□□□ -1.92
LINC00540-201ENST00000611481 APOL4Q9BPW4 351 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 DPM3Q9P2X0 92 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 SHPKQ9UHJ6 478 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 SAMHD1Q9Y3Z3 626 aaKnown RBP3.04□□□□□ -1.92
LINC00540-201ENST00000611481 LRRC42Q9Y546 428 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 OR51B2Q9Y5P1 312 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 IGKV1D-17A0A075B6S4 117 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 TRAV39A0A0B4J263 110 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 A0A1W2PRG6 482 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 GGT3PA6NGU5 568 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 OR2AT4A6NND4 320 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 NCBP2LA6PVI3 153 aaKnown RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 CD300LBA8K4G0 201 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 CDIPTO14735 213 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 DEFB4AO15263 64 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 IFNA21P01568 189 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 IFNA17P01571 189 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 RPSAP08865 295 aaKnown RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 LGALS1P09382 135 aaKnown RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 TCP1P17987 556 aaKnown RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ZP3P21754 424 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 HSD11B1P28845 292 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 RAB7AP51149 207 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ESRRGP62508 458 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 CD164Q04900 197 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 TSPAN31Q12999 210 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 KIAA0040Q15053 153 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ATP6AP1Q15904 470 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 GUCA2BQ16661 112 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 LIN52Q52LA3 116 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 OGFRL1Q5TC84 451 aaPredicted RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 OTPQ5XKR4 325 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 THOC7Q6I9Y2 204 aaKnown RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 SMARCD3Q6STE5 483 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 TMUB2Q71RG4 321 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 C10orf107Q8IVU9 208 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 C6orf223Q8N319 242 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ARRDC1Q8N5I2 433 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 OR1M1Q8NGA1 313 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 OR8S1Q8NH09 359 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 OR52P1PQ8NH57 321 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 TMEM230Q96A57 120 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 YIPF6Q96EC8 236 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 NXF2Q9GZY0 626 aaKnown RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ISG20L2Q9H9L3 353 aaKnown RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 C12orf10Q9HB07 376 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 RRAGDQ9NQL2 400 aaPredicted RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 SPANXB1Q9NS25 103 aaPredicted RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF355PQ9NSJ1 428 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 PLCXD1Q9NUJ7 323 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 FGFR1OP2Q9NVK5 253 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 BABAM2Q9NXR7 383 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 TAS2R5Q9NYW4 299 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 SLC22A13Q9Y226 551 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ANGPT4Q9Y264 503 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF443Q9Y2A4 671 aaPredicted RBP3.03□□□□□ -1.92
LINC00540-201ENST00000611481 AP3M1Q9Y2T2 418 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 KLF12Q9Y4X4 402 aa3.03□□□□□ -1.92
LINC00540-201ENST00000611481 TNXBP22105 4242 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 IGHV3OR16-13A0A075B7E8 117 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 TRAV9-2A0A087WT02 112 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 A0A1B0GWA3 101 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 OR6C6A6NF89 314 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms