RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RPL8P62917 257 aaKnown RBP4.69□□□□□ -1.66
CUX1-220ENST00000607092 DEFA5Q01523 94 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 RBMS2Q15434 407 aaKnown RBP4.69□□□□□ -1.66
CUX1-220ENST00000607092 MSMO1Q15800 293 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 DEFB135Q30KP9 77 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 IGSF11Q5DX21 431 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 LIPKQ5VXJ0 399 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 SPSB3Q6PJ21 355 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 BTNL8Q6UX41 500 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 ZNF66Q6ZN08 573 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 IDO2Q6ZQW0 420 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 LINC00336Q6ZUF6 198 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 NR2C2APQ86WQ0 139 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 H1FOOQ8IZA3 346 aaPredicted RBP4.69□□□□□ -1.66
CUX1-220ENST00000607092 OR10R2Q8NGX6 335 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 CD300LFQ8TDQ1 290 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 VN1R17PQ8TDU5 208 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 AP3S1Q92572 193 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 PPP1R14BQ96C90 147 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 CMTM3Q96MX0 182 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 KRTAP17-1Q9BYP8 105 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 DAZ1Q9NQZ3 744 aaKnown RBP4.69□□□□□ -1.66
CUX1-220ENST00000607092 MLXQ9UH92 298 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 OR2W1Q9Y3N9 320 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 V9GY05 133 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 TRAV1-2A0A0B4J238 106 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 LINC00473A8K010 186 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 MPTX1A8MV57 137 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 TEX22C9J3V5 150 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 K7EMT4 169 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 RBFOX2O43251 390 aaKnown RBP eCLIP4.68□□□□□ -1.668e-7■■□□□ 12
CUX1-220ENST00000607092 RBMXL2O75526 392 aaKnown RBP4.68□□□□□ -1.66
CUX1-220ENST00000607092 HLA-AP01891 365 aaKnown RBP4.68□□□□□ -1.66
CUX1-220ENST00000607092 HLA-DQB1P01920 261 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 ZNF735P0CB33 412 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 CTRB1P17538 263 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 HLA-GP17693 338 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 PAFAH1B2P68402 229 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 MRGPRG-AS1Q2M3A8 158 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 C2orf76Q3KRA6 126 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 ZNF585BQ52M93 769 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 TMEM41BQ5BJD5 291 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 PLAC9Q5JTB6 97 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 SPANXN2Q5MJ10 180 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 CTRB2Q6GPI1 263 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 MZT2AQ6P582 158 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 Q6ZNX1 250 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 ZBTB34Q8NCN2 500 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 C11orf45Q8TAV5 145 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 C2CD4CQ8TF44 421 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 TCTEX1D2Q8WW35 142 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 TMEM190Q8WZ59 177 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 SLC25A46Q96AG3 418 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 BSCL2Q96G97 398 aaPredicted RBP4.68□□□□□ -1.66
CUX1-220ENST00000607092 COMMD5Q9GZQ3 224 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 C11orf68Q9H3H3 251 aaKnown RBP4.68□□□□□ -1.66
CUX1-220ENST00000607092 AP5S1Q9NUS5 200 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 BET1LQ9NYM9 111 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 RBMX2Q9Y388 322 aaKnown RBP4.68□□□□□ -1.66
CUX1-220ENST00000607092 DMRT1Q9Y5R6 373 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 U3KQE9 123 aa4.68□□□□□ -1.66
CUX1-220ENST00000607092 IGLV11-55A0A075B6I3 123 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 H3BS24 57 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 NDUFA4O00483 81 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 MFNGO00587 321 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 TGOLN2O43493 480 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 IL6RP08887 468 aaPredicted RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 NQO2P16083 231 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 GPR183P32249 361 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 TNFSF8P32971 234 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 SDC2P34741 201 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 TAS2R31P59538 309 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 RPS25P62851 125 aaKnown RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 FABP5Q01469 135 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 CATR1Q13166 79 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 RGS21Q2M5E4 152 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 CNIH2Q6PI25 160 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 CCDC190Q86UF4 302 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 PUSL1Q8N0Z8 303 aaKnown RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 RPP25LQ8N5L8 163 aaKnown RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 ZNF502Q8TBZ5 544 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 CACNG8Q8WXS5 425 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 TMEM203Q969S6 136 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 RARRES2Q99969 163 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 CCDC32Q9BV29 185 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 SSBP4Q9BWG4 385 aaPredicted RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 ZNF436Q9C0F3 470 aaPredicted RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 CSTL1Q9H114 145 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 MAP6D1Q9H9H5 199 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 RABL2AQ9UBK7 228 aaPredicted RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 RABL2BQ9UNT1 228 aa4.67□□□□□ -1.66
CUX1-220ENST00000607092 AK6Q9Y3D8 172 aaKnown RBP4.67□□□□□ -1.66
CUX1-220ENST00000607092 KIAA1109Q2LD37 5005 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 TMEM272A0A1B0GTI8 110 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 HMX3A6NHT5 357 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 C15orf62A8K5M9 175 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 RAB27BO00194 218 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 CTDSP2O14595 271 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 HPRT1P00492 218 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 MYL9P24844 172 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms