RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, human

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TUBE1-208	ENST00000604743	COPZ2	Q9P299	210 aa		11.04	□□□□□ -0.64
TUBE1-208	ENST00000604743	RSL24D1	Q9UHA3	163 aa	Known RBP	11.04	□□□□□ -0.64
TUBE1-208	ENST00000604743	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	BMPR1B	O00238	502 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	IGKV1-39	P01597	117 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	IGKV1D-39	P04432	117 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	AKAIN1	P0CW23	69 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	OR13C7	P0DN81	318 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	SPN	P16150	400 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	HIST1H1B	P16401	226 aa	Known RBP	11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	MECP2	P51608	486 aa	Known RBP	11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	RND3	P61587	244 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	TATDN3	Q17R31	274 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	OR9G4	Q8NGQ1	327 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	OR6Q1	Q8NGQ2	317 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	OR4A16	Q8NH70	328 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	ZFAND1	Q8TCF1	268 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	SEC22A	Q96IW7	307 aa		11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	NXF2	Q9GZY0	626 aa	Known RBP	11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	FAM212B	Q9NTI7	297 aa	Predicted RBP	11.03	□□□□□ -0.64
TUBE1-208	ENST00000604743	C3orf85	A0A1B0GTC6	90 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	DBX1	A6NMT0	343 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	HLA-A	P01891	365 aa	Known RBP	11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	SP6	Q3SY56	376 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	CLEC19A	Q6UXS0	136 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	CCDC71L	Q8N9Z2	235 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	EEF1AKMT3	Q96AZ1	226 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	TP53RK	Q96S44	253 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	TSC22D3	Q99576	134 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	RBM38	Q9H0Z9	239 aa	Known RBP	11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	NDUFA13	Q9P0J0	144 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	PRND	Q9UKY0	176 aa		11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	C14orf166	Q9Y224	244 aa	Known RBP	11.02	□□□□□ -0.65
TUBE1-208	ENST00000604743	IGLV11-55	A0A075B6I3	123 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743		H0Y980	276 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	GSTZ1	O43708	216 aa	Predicted RBP	11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	CTSD	P07339	412 aa	Predicted RBP	11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	FGF2	P09038	288 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	PTBP1	P26599	531 aa	Known RBP eCLIP	11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	S100A5	P33763	92 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	ARL3	P36405	182 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	WT1-AS	Q06250	92 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	CD69	Q07108	199 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	IZUMO4	Q1ZYL8	232 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	TRIM16L	Q309B1	348 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	PYDC2	Q56P42	97 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	THOC7	Q6I9Y2	204 aa	Known RBP	11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	SLC25A24	Q6NUK1	477 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	OR51S1	Q8NGJ8	323 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	LSM10	Q969L4	123 aa	Known RBP	11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	SRSF8	Q9BRL6	282 aa	Known RBP	11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	ZC4H2	Q9NQZ6	224 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	NDUFA4L2	Q9NRX3	87 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	MCUB	Q9NWR8	336 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	FKBP11	Q9NYL4	201 aa		11.01	□□□□□ -0.65
TUBE1-208	ENST00000604743	DNAH9	Q9NYC9	4486 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	IGHV3-21	A0A0B4J1V1	117 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	ANKRD20A5P	A0PJZ0	165 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	MFSD2B	A6NFX1	497 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	C15orf61	A6NNL5	157 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	OR2C1	O95371	312 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	GP9	P14770	177 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	AKR1C2	P52895	323 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	GDPD1	Q8N9F7	314 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	CCDC140	Q96MF4	163 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	TMEM56	Q96MV1	263 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	SOST	Q9BQB4	213 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	THAP7	Q9BT49	309 aa	Predicted RBP	11	□□□□□ -0.65
TUBE1-208	ENST00000604743	TMEM14B	Q9NUH8	114 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	THYN1	Q9P016	225 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	LSM4	Q9Y4Z0	139 aa	Known RBP	11	□□□□□ -0.65
TUBE1-208	ENST00000604743	DMRT1	Q9Y5R6	373 aa		11	□□□□□ -0.65
TUBE1-208	ENST00000604743	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	CYB5B	O43169	146 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	GGCT	O75223	188 aa	Known RBP	10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	CLEC3B	P05452	202 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	CSN3	P07498	182 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	DCTN2	Q13561	401 aa	Known RBP	10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	SPINK9	Q5DT21	86 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	FAM209B	Q5JX69	171 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	IL34	Q6ZMJ4	242 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	CADM3	Q8N126	398 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	OR5B3	Q8NH48	314 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	RNASE11	Q8TAA1	199 aa	Known RBP	10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	CXorf58	Q96LI9	332 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	PRRT1	Q99946	306 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	RTBDN	Q9BSG5	229 aa	Predicted RBP	10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	PEMT	Q9UBM1	199 aa		10.99	□□□□□ -0.65
TUBE1-208	ENST00000604743	TRBV7-1	A0A0A6YYK4	115 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	ZNF701	M0R085	212 aa	Predicted RBP	10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	IGKV1-5	P01602	117 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	IGLV1-51	P01701	117 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	OR5AC1	P0C628	307 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	KLK9	Q2XQG4	91 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743		Q8N402	240 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	B9D2	Q9BPU9	175 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	C5orf66	Q9H5L9	145 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	SCP2D1	Q9UJQ7	156 aa		10.98	□□□□□ -0.65
TUBE1-208	ENST00000604743	KLK9	Q9UKQ9	250 aa		10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms