RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	YTHDF1	Q9BYJ9	559 aa	Known RBP	13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	NSG2	Q9Y328	171 aa		13.15	□□□□□ -0.3
SHKBP1-223	ENST00000600552	TEX50	A0A1B0GTY4	177 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	CYB5B	O43169	146 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	RLN1	P04808	185 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	TGFBR1	P36897	503 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	LPAR6	P43657	344 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	SLC38A6	Q8IZM9	456 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	UBAC2	Q8NBM4	344 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	TSPAN14	Q8NG11	270 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	OVOL2	Q9BRP0	275 aa		13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	ZNF2	Q9BSG1	426 aa	Predicted RBP	13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552	MRPL27	Q9P0M9	148 aa	Known RBP	13.14	□□□□□ -0.31
SHKBP1-223	ENST00000600552		A0A0A6YYH2	397 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	CXorf65	A6NEN9	183 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552		A6NJ64	397 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	TGOLN2	O43493	480 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	KRAS	P01116	189 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	PTBP1	P26599	531 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	GNRHR	P30968	328 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	SCAND1	P57086	179 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	LSM3	P62310	102 aa	Known RBP	13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	OR2C3	Q8N628	320 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	OR1L8	Q8NGR8	309 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	CD300LF	Q8TDQ1	290 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	MARC2	Q969Z3	335 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	S100A16	Q96FQ6	103 aa	Known RBP	13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	PLEKHA2	Q9HB19	425 aa		13.13	□□□□□ -0.31
SHKBP1-223	ENST00000600552	G6PC	P35575	357 aa		13.12	□□□□□ -0.31
SHKBP1-223	ENST00000600552	WT1-AS	Q06250	92 aa		13.12	□□□□□ -0.31
SHKBP1-223	ENST00000600552	POU2AF1	Q16633	256 aa		13.12	□□□□□ -0.31
SHKBP1-223	ENST00000600552	GDPD1	Q8N9F7	314 aa		13.12	□□□□□ -0.31
SHKBP1-223	ENST00000600552	OR5H2	Q8NGV7	314 aa		13.12	□□□□□ -0.31
SHKBP1-223	ENST00000600552	OR51B2	Q9Y5P1	312 aa		13.12	□□□□□ -0.31
SHKBP1-223	ENST00000600552	TRAV25	A0A0B4J276	109 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	XRCC3	O43542	346 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	PGLYRP1	O75594	196 aa	Predicted RBP	13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	SNAPC5	O75971	98 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	SERPINE2	P07093	398 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	C8orf88	P0DMB2	117 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	RPL35A	P18077	110 aa	Known RBP	13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	KLK9	Q2XQG4	91 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552		Q56UQ5	140 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	TMEM69	Q5SWH9	247 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	SAMD12	Q8N8I0	201 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	VN1R17P	Q8TDU5	208 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	COMMD9	Q9P000	198 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	KLK9	Q9UKQ9	250 aa		13.11	□□□□□ -0.31
SHKBP1-223	ENST00000600552	ALMS1	Q8TCU4	4167 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	BIRC6	Q9NR09	4857 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552		A0A0J9YWU9	116 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	MARCH11	A6NNE9	402 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	F2R	P25116	425 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	MFAP2	P55001	183 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	ELL	P55199	621 aa	Predicted RBP	13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	PHLDA2	Q53GA4	152 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	LAMTOR1	Q6IAA8	161 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	FCAMR	Q8WWV6	532 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	TMEM190	Q8WZ59	177 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	BORCS5	Q969J3	196 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	DGCR14	Q96DF8	476 aa	Known RBP	13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	SRSF8	Q9BRL6	282 aa	Known RBP	13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	CHRDL1	Q9BU40	450 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	ZNF436	Q9C0F3	470 aa	Predicted RBP	13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	C5orf66	Q9H5L9	145 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	C21orf62	Q9NYP8	219 aa		13.1	□□□□□ -0.31
SHKBP1-223	ENST00000600552	HLA-DMA	P28067	261 aa		13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	TAS2R20	P59543	309 aa		13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	DEFB135	Q30KP9	77 aa		13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	UBE2NL	Q5JXB2	153 aa		13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	CMTM1	Q8IZ96	169 aa		13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	SCARB1	Q8WTV0	552 aa		13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	MOB3A	Q96BX8	217 aa		13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	PLEC	Q15149	4684 aa	Known RBP	13.09	□□□□□ -0.31
SHKBP1-223	ENST00000600552	IGHV3-49	A0A0A0MS15	119 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	SPRY2	O43597	315 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	LY6G6C	O95867	125 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	RPS19	P39019	145 aa	Known RBP	13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	TFPI2	P48307	235 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	APOC4	P55056	127 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	THOC7	Q6I9Y2	204 aa	Known RBP	13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	DHRS11	Q6UWP2	260 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	OR6F1	Q8NGZ6	308 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	OR5B3	Q8NH48	314 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	LSM10	Q969L4	123 aa	Known RBP	13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	BSCL2	Q96G97	398 aa	Predicted RBP	13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	SPAG8	Q99932	426 aa	Predicted RBP	13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	FXYD6	Q9H0Q3	95 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	DAZ1	Q9NQZ3	744 aa	Known RBP	13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	NDUFA4L2	Q9NRX3	87 aa		13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	F11R	Q9Y624	299 aa	Known RBP	13.08	□□□□□ -0.32
SHKBP1-223	ENST00000600552	IGKV3-7	A0A075B6H7	116 aa		13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	GPR31	O00270	319 aa		13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	YIF1A	O95070	293 aa		13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	CTSD	P07339	412 aa	Predicted RBP	13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	PRSS3	P35030	304 aa		13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	TAS2R46	P59540	309 aa		13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	TSPAN5	P62079	268 aa		13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.07	□□□□□ -0.32
SHKBP1-223	ENST00000600552	LYG2	Q86SG7	212 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms