RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 OR11H4Q8NGC9 324 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 ZNF48Q96MX3 618 aaPredicted RBP12.3□□□□□ -0.44
UPF1-206ENST00000598471 ZC4H2Q9NQZ6 224 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 PSENENQ9NZ42 101 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 TNFSF18Q9UNG2 199 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 TSC22D2O75157 780 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 OPN1MWP04001 364 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 OPN1MW2P0DN77 364 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 OPN1MW3P0DN78 364 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 MYOD1P15172 320 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 SRD5A1P18405 259 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 C4BPBP20851 252 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 MRGPRG-AS1Q2M3A8 158 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 ZNF562Q6V9R5 426 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 ACOT7LQ6ZUV0 252 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 HSD17B13Q7Z5P4 300 aaPredicted RBP12.29□□□□□ -0.44
UPF1-206ENST00000598471 OR2C3Q8N628 320 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 TMEM86BQ8N661 226 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 SIGLECL1Q8N7X8 197 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 C5orf56Q8N8D9 126 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 GRPEL2Q8TAA5 225 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 SRSF12Q8WXF0 261 aaKnown RBP12.29□□□□□ -0.44
UPF1-206ENST00000598471 SRSF8Q9BRL6 282 aaKnown RBP12.29□□□□□ -0.44
UPF1-206ENST00000598471 MFFQ9GZY8 342 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 SLC25A31Q9H0C2 315 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 NDUFA4L2Q9NRX3 87 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 LYRM2Q9NU23 88 aaPredicted RBP12.29□□□□□ -0.44
UPF1-206ENST00000598471 VPREB3Q9UKI3 123 aa12.29□□□□□ -0.44
UPF1-206ENST00000598471 FCN1O00602 326 aa12.28□□□□□ -0.44
UPF1-206ENST00000598471 SCAF4O95104 1147 aaKnown RBP12.28□□□□□ -0.44
UPF1-206ENST00000598471 ERHP84090 104 aaKnown RBP12.28□□□□□ -0.44
UPF1-206ENST00000598471 OR2F1Q13607 317 aa12.28□□□□□ -0.44
UPF1-206ENST00000598471 FXYD3Q14802 87 aa12.28□□□□□ -0.44
UPF1-206ENST00000598471 C10orf55Q5SWW7 151 aa12.28□□□□□ -0.44
UPF1-206ENST00000598471 ABHD5Q8WTS1 349 aa12.28□□□□□ -0.44
UPF1-206ENST00000598471 ARPC1AQ92747 370 aa12.28□□□□□ -0.44
UPF1-206ENST00000598471 C11orf1Q9H5F2 150 aa12.28□□□□□ -0.44
UPF1-206ENST00000598471 STRAPQ9Y3F4 350 aaKnown RBP12.28□□□□□ -0.44
UPF1-206ENST00000598471 INS-IGF2F8WCM5 200 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 HOXA3O43365 443 aaPredicted RBP12.27□□□□□ -0.45
UPF1-206ENST00000598471 IFNA10P01566 189 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 RPL12P30050 165 aaKnown RBP12.27□□□□□ -0.45
UPF1-206ENST00000598471 VDAC2P45880 294 aaPredicted RBP12.27□□□□□ -0.45
UPF1-206ENST00000598471 NKX2-5P52952 324 aaPredicted RBP12.27□□□□□ -0.45
UPF1-206ENST00000598471 PAX9P55771 341 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 ATP5IP56385 69 aaPredicted RBP12.27□□□□□ -0.45
UPF1-206ENST00000598471 CX3CL1P78423 397 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 ZNF345Q14585 488 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 SPANXN5Q5MJ07 72 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 STX12Q86Y82 276 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 AQP10Q96PS8 301 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 U3KQ87 197 aa12.27□□□□□ -0.45
UPF1-206ENST00000598471 ANK3Q12955 4377 aaKnown RBP12.27□□□□□ -0.45
UPF1-206ENST00000598471 A0A0D9SG52 128 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 H3BP45 60 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 TMEM50AO95807 157 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 SNCAP37840 140 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 HTR2BP41595 481 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 SUB1P53999 127 aaKnown RBP eCLIP12.26□□□□□ -0.45
UPF1-206ENST00000598471 RAB11AP62491 216 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 BAXQ07812 192 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 TUSC1Q2TAM9 212 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 ZNF418Q8TF45 676 aaPredicted RBP12.26□□□□□ -0.45
UPF1-206ENST00000598471 TNFRSF19Q9NS68 423 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 PAIP2BQ9ULR5 123 aaKnown RBP12.26□□□□□ -0.45
UPF1-206ENST00000598471 NAV3Q8IVL0 2385 aa12.26□□□□□ -0.45
UPF1-206ENST00000598471 TLN2Q9Y4G6 2542 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 IGHV7-81A0A0B4J1V7 117 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 FAM24AA6NFZ4 105 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 KCNAB3O43448 404 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 OR8U8P0C7N1 319 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 HKR1P10072 659 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 NPY1RP25929 384 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 AP2S1P53680 142 aaPredicted RBP12.25□□□□□ -0.45
UPF1-206ENST00000598471 SSBP2P81877 361 aaPredicted RBP12.25□□□□□ -0.45
UPF1-206ENST00000598471 C9orf62Q8N4C0 152 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 TMEM252Q8N6L7 170 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 SLC24A4Q8NFF2 622 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 OR10W1Q8NGF6 305 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 HSPB11Q9Y547 144 aa12.25□□□□□ -0.45
UPF1-206ENST00000598471 IGSF23A1L1A6 192 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 RNF222A6NCQ9 220 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 MSGN1A6NI15 193 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 CGB1A6NKQ9 187 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 TEX22C9J3V5 150 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 OR13C7P0DN81 318 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 CXCL2P19875 107 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 SULT1A1P50225 295 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 HBG1P69891 147 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 HBG2P69892 147 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 EWSR1Q01844 656 aaKnown RBP eCLIP12.24□□□□□ -0.45
UPF1-206ENST00000598471 C9orf152Q5JTZ5 239 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 KCNRGQ8N5I3 272 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 ARL6Q9H0F7 186 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 PARP11Q9NR21 331 aa12.24□□□□□ -0.45
UPF1-206ENST00000598471 TEP1Q99973 2627 aaKnown RBP12.24□□□□□ -0.45
UPF1-206ENST00000598471 KANTRA0A1W2PQU2 76 aa12.23□□□□□ -0.45
UPF1-206ENST00000598471 IGLC7A0M8Q6 106 aa12.23□□□□□ -0.45
UPF1-206ENST00000598471 INAFM1C9JVW0 142 aa12.23□□□□□ -0.45
UPF1-206ENST00000598471 E7EUB6 86 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms