RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 OCC1Q8TAD7 63 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 GP6Q9HCN6 339 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 FOXH1O75593 365 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 SRSF6Q13247 344 aaKnown RBP12.68□□□□□ -0.38
UPF1-204ENST00000596842 TGIF2LYQ8IUE0 185 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 CISD2Q8N5K1 135 aaKnown RBP12.68□□□□□ -0.38
UPF1-204ENST00000596842 ACY3Q96HD9 319 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 S1PR3Q99500 378 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 AGMATQ9BSE5 352 aa12.68□□□□□ -0.38
UPF1-204ENST00000596842 TRBV20OR9-2A0A075B6H5 130 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 KLF3P57682 345 aaPredicted RBP12.67□□□□□ -0.38
UPF1-204ENST00000596842 RANP62826 216 aaKnown RBP12.67□□□□□ -0.38
UPF1-204ENST00000596842 UBALD2Q8IYN6 164 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 FAM216AQ8WUB2 273 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 LRFN3Q9BTN0 628 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 SEPSECSQ9HD40 501 aaKnown RBP12.67□□□□□ -0.38
UPF1-204ENST00000596842 ENY2Q9NPA8 101 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 SPRY3O43610 288 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 CRISP2P16562 243 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 PRDX2P32119 198 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 RPL31P62899 125 aaKnown RBP12.67□□□□□ -0.38
UPF1-204ENST00000596842 TPTE2P1Q5T6R2 138 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 OR10G8Q8NGN5 311 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 MEGF9Q9H1U4 602 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 SPTA1P02549 2419 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 ACP1P24666 158 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 FXYD3Q14802 87 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 TREML4Q6UXN2 200 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 HSD17B10Q99714 261 aaKnown RBP12.67□□□□□ -0.38
UPF1-204ENST00000596842 ACACAQ13085 2346 aa12.67□□□□□ -0.38
UPF1-204ENST00000596842 FCN1O00602 326 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 OR10J4P0C629 311 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 HLA-DRB5Q30154 266 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 SRP14P37108 136 aaKnown RBP12.66□□□□□ -0.38
UPF1-204ENST00000596842 FBLN7Q53RD9 439 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 MOB3BQ86TA1 216 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 CD177Q8N6Q3 437 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 FER1L6-AS2Q96M78 137 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 CXXC4Q9H2H0 198 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 PDE6DO43924 150 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 OR7C2O60412 319 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 SLC35E4Q6ICL7 350 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 LYG1Q8N1E2 194 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 STPG4Q8N801 248 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 ZBTB34Q8NCN2 500 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 LAMTOR2Q9Y2Q5 125 aa12.66□□□□□ -0.38
UPF1-204ENST00000596842 IGHV3-48P01763 117 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 ZNF83P51522 516 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 NHLRC2Q8NBF2 726 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 MGST2Q99735 147 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 PYGO2Q9BRQ0 406 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 TMEM140Q9NV12 185 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 WDR83OSQ9Y284 106 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 IQCF6A8MYZ5 107 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 CECR9P0C854 216 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 C11orf53Q8IXP5 236 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 ZCCHC14Q8WYQ9 949 aaKnown RBP12.65□□□□□ -0.38
UPF1-204ENST00000596842 LOXL4Q96JB6 756 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 YTHDF2Q9Y5A9 579 aaKnown RBP12.65□□□□□ -0.38
UPF1-204ENST00000596842 ZNF891A8MT65 544 aaPredicted RBP12.65□□□□□ -0.38
UPF1-204ENST00000596842 CGAP01215 116 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 DUTP33316 252 aaKnown RBP12.65□□□□□ -0.38
UPF1-204ENST00000596842 ZNF718Q3SXZ3 478 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 HES3Q5TGS1 186 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 DOLPP1Q86YN1 238 aa12.65□□□□□ -0.38
UPF1-204ENST00000596842 F2Z2F3 143 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 MOGAT3Q86VF5 341 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 PLEKHA3Q9HB20 300 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 ZNRD1Q9P1U0 126 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 SNURFLB1AK76 121 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 HSBP1L1C9JCN9 74 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 TMEM238C9JI98 176 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 NKX2-8O15522 239 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 PROP1O75360 226 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 TNFSF4P23510 183 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 PSG5Q15238 335 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 GABRA6Q16445 453 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 Q56UQ5 140 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 FAM214BQ7L5A3 538 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 OR8I2Q8N0Y5 310 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 CLCF1Q9UBD9 225 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 KMT2EQ8IZD2 1858 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 PSG1P11464 419 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 TIMP3P35625 211 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 GMPPAQ96IJ6 420 aaPredicted RBP12.64□□□□□ -0.39
UPF1-204ENST00000596842 TCF19Q9Y242 345 aa12.64□□□□□ -0.39
UPF1-204ENST00000596842 SPENQ96T58 3664 aaKnown RBP12.63□□□□□ -0.39
UPF1-204ENST00000596842 VENTXO95231 258 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 ZNF134P52741 427 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 TMEM178AQ8NBL3 297 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 RND1Q92730 232 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 GGTLC1Q9BX51 225 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 IGFBP2P18065 325 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 RBX1P62877 108 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 SPRNQ5BIV9 151 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 MRPL54Q6P161 138 aaKnown RBP12.63□□□□□ -0.39
UPF1-204ENST00000596842 STPG3Q8N7X2 389 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 ZC2HC1AQ96GY0 325 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 UHRF2Q96PU4 802 aa12.63□□□□□ -0.39
UPF1-204ENST00000596842 MRPL18Q9H0U6 180 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms