RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 SPSB3Q6PJ21 355 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 SPAG16Q8N0X2 631 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 GDPD1Q8N9F7 314 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 NUDCD2Q8WVJ2 157 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 RHPN1-AS1Q9BWJ2 59 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 QTRT1Q9BXR0 403 aaKnown RBP12.77□□□□□ -0.37
CCDC40-211ENST00000574099 C8orf4Q9NR00 106 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 C21orf62Q9NYP8 219 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 ETV7Q9Y603 341 aa12.77□□□□□ -0.37
CCDC40-211ENST00000574099 IGHV3OR16-13A0A075B7E8 117 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 IGHV3-74A0A0B4J1X5 117 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 METTL21EPA6NDL7 271 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 F8W735 103 aaPredicted RBP12.76□□□□□ -0.37
CCDC40-211ENST00000574099 K7EMT4 169 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 M0R2N4 97 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 SULT1C2O00338 296 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 UPK2O00526 184 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 CHEK1O14757 476 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 CYB5BO43169 146 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 OR13C7P0DN81 318 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 PSMA1P25786 263 aaKnown RBP12.76□□□□□ -0.37
CCDC40-211ENST00000574099 CDNFQ49AH0 187 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 Q56UQ5 140 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 Q6ZTC4 211 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 SECTM1Q8WVN6 248 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 CCL28Q9NRJ3 127 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 DNAH17Q9UFH2 4485 aa12.76□□□□□ -0.37
CCDC40-211ENST00000574099 IGHV7-4-1A0A0J9YVY3 117 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 IFITM5A6NNB3 132 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 C15orf62A8K5M9 175 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 RTL8CO15255 209 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 MRPS14O60783 128 aaKnown RBP12.75□□□□□ -0.37
CCDC40-211ENST00000574099 HLA-DMBP28068 263 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 WT1-ASQ06250 92 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 LEMD1Q68G75 181 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 CNIH2Q6PI25 160 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 Q8NAQ8 132 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 TMEM116Q8NCL8 245 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 SCARB1Q8WTV0 552 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 SRSF8Q9BRL6 282 aaKnown RBP12.75□□□□□ -0.37
CCDC40-211ENST00000574099 TMEM140Q9NV12 185 aa12.75□□□□□ -0.37
CCDC40-211ENST00000574099 DNAH11Q96DT5 4516 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 IGHV4-28A0A0C4DH34 117 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 TMEM235A6NFC5 223 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 ERICH4A6NGS2 130 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 YIF1AO95070 293 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 SERPINE2P07093 398 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 RBMY1A1P0DJD3 496 aaKnown RBP12.74□□□□□ -0.37
CCDC40-211ENST00000574099 RBMY1CP0DJD4 496 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 CMC4P56277 68 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-211ENST00000574099 RBMY1FQ15415 496 aaKnown RBP12.74□□□□□ -0.37
CCDC40-211ENST00000574099 HACD4Q5VWC8 232 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 DMBX1Q8NFW5 382 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 CMTM3Q96MX0 182 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 AIFM2Q9BRQ8 373 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 HINT2Q9BX68 163 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 SCN3BQ9NY72 215 aa12.74□□□□□ -0.37
CCDC40-211ENST00000574099 TRAV10A0A0B4J240 114 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 SMIM30A4D0T7 59 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 PDCD5O14737 125 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 TRAPPC2P0DI81 140 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 TRAPPC2BP0DI82 140 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 PTHLHP12272 177 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 NQO2P16083 231 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 TAS2R31P59538 309 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 MLLT11Q13015 90 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-211ENST00000574099 ARL6IP1Q15041 203 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 NR2C2APQ86WQ0 139 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 OR13F1Q8NGS4 319 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 ZNF414Q96IQ9 312 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 DCSTAMPQ9H295 470 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 HRH4Q9H3N8 390 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 ANXA10Q9UJ72 324 aa12.73□□□□□ -0.37
CCDC40-211ENST00000574099 F11RQ9Y624 299 aaKnown RBP12.73□□□□□ -0.37
CCDC40-211ENST00000574099 PKD1P98161 4303 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 C15orf61A6NNL5 157 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 K7EIM0 57 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 NUPL2O15504 423 aaKnown RBP12.72□□□□□ -0.37
CCDC40-211ENST00000574099 HPRT1P00492 218 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 GNG2P59768 71 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 DEFB131AP59861 70 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 PVRIGQ6DKI7 326 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 OR51H1Q8NH63 302 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 GIMAP1Q8WWP7 306 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 ACOT13Q9NPJ3 140 aa12.72□□□□□ -0.37
CCDC40-211ENST00000574099 TEX50A0A1B0GTY4 177 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 RBFOX2O43251 390 aaKnown RBP eCLIP12.71□□□□□ -0.37
CCDC40-211ENST00000574099 SSX5O60225 188 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 CTSGP08311 255 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 MYL9P24844 172 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 FCGR2CP31995 323 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 CATR1Q13166 79 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 RCN1Q15293 331 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 POU2AF1Q16633 256 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 FAM90A2PQ658T7 463 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 THOC7Q6I9Y2 204 aaKnown RBP12.71□□□□□ -0.37
CCDC40-211ENST00000574099 ZNF773Q6PK81 442 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 TCF24Q7RTU0 167 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 ZNF575Q86XF7 245 aa12.71□□□□□ -0.37
CCDC40-211ENST00000574099 CCDC90BQ9GZT6 254 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms