RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 DMAC2Q9NW81 257 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 TAS2R1Q9NYW7 299 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 DHRS4-AS1Q9P1J3 65 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 SHPKQ9UHJ6 478 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 PYCARDQ9ULZ3 195 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 COQ4Q9Y3A0 265 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 HSPB11Q9Y547 144 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 ZNF780BQ9Y6R6 833 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 NUP210LQ5VU65 1888 aa2.17□□□□□ -2.06
VPS35-209ENST00000568642 IGHV7-81A0A0B4J1V7 117 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 IGHV1-69DA0A0B4J2H0 117 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 TRAPPC13A5PLN9 417 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR5H14A6NHG9 310 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 C3orf84H3BNL1 204 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 HMGB3O15347 200 aaKnown RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 TCF21O43680 179 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 CD5LO43866 347 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 SMIM24O75264 130 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 ARL6IP5O75915 188 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 NTN1O95631 604 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 ZNF682O95780 498 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 IGLV2-23P01705 113 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 IGHV4-34P06331 123 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 BPGMP07738 259 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 CSF3P09919 207 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 PRB4P10163 310 aaPredicted RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 CD79AP11912 226 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 MYL9P24844 172 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 CD34P28906 385 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 BLVRBP30043 206 aaPredicted RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 CA7P43166 264 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 TDGF1P3P51864 188 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 GNG5P63218 68 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 CYCSP99999 105 aaKnown RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 IFITM3Q01628 133 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 PAX8Q06710 450 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 BTN1A1Q13410 526 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 C1DQ13901 141 aaKnown RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 SLC10A1Q14973 349 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 QPRTQ15274 297 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR8B8Q15620 311 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 RSPO1Q2MKA7 263 aaPredicted RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 RNF212Q495C1 297 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 KLHL12Q53G59 568 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 NHLRC3Q5JS37 347 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 ATAD3CQ5T2N8 411 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 LEMD1Q68G75 181 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 SHISA6Q6ZSJ9 500 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 GOLT1AQ6ZVE7 132 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 ZNF615Q8N8J6 731 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 TMEM75Q8N9X5 138 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR11H6Q8NGC7 330 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR11H7Q8NGC8 314 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR10G4Q8NGN3 311 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR2G3Q8NGZ4 309 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR4S2Q8NH73 311 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 PRSS3P2Q8NHM4 247 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 RNASE11Q8TAA1 199 aaKnown RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 PDXPQ96GD0 296 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 TMEM101Q96IK0 257 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 OR52E6Q96RD3 313 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 TSC22D3Q99576 134 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 TMEM243Q9BU79 118 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 KIFC1Q9BW19 673 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 RSPO3Q9BXY4 272 aaPredicted RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 LINC00597Q9H2U6 94 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 PLSCR3Q9NRY6 295 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 ZNF629Q9UEG4 869 aaPredicted RBP2.16□□□□□ -2.06
VPS35-209ENST00000568642 HDGFL3Q9Y3E1 203 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 PRSS21Q9Y6M0 314 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 ALPK2Q86TB3 2170 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 LYSTQ99698 3801 aa2.16□□□□□ -2.06
VPS35-209ENST00000568642 TMED7-TICAM2A0A0A6YYA0 188 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 TRAV8-3A0A0A6YYJ7 113 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 IGHV2-26A0A0B4J1V2 119 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 LOC389332A0A1B0GUA5 103 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 LOC102725191A0A1B0GVB3 256 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 A0A1B0GVG6 124 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 IFITM10A6NMD0 228 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 C4orf51C9J302 202 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 I3L4J1 428 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 M0QYV0 167 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 DNASE2O00115 360 aaPredicted RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 DUS4LO95620 317 aaKnown RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 AMBPP02760 352 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 LGALS1P09382 135 aaKnown RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 CCL4P13236 92 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 MUC1P15941 1255 aaPredicted RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 SPI1P17947 270 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 RAB3BP20337 219 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 IL3RAP26951 378 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 FMO3P31513 532 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 CA5AP35218 305 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 TCTAP57738 103 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 DEFA1P59665 94 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 RAB2AP61019 212 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 SELENOTP62341 195 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 HLA-DRB3P79483 266 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 CXCL6P80162 114 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 IL15RAQ13261 267 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms