RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 OR13C7P0DN81 318 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 S100GP29377 79 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 LPCAT3Q6P1A2 487 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 HSD17B13Q7Z5P4 300 aaPredicted RBP16.96■□□□□ 0.31
CLN3-232ENST00000568443 SNX29P2Q8IUI4 249 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 HINT2Q9BX68 163 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 FXYD6Q9H0Q3 95 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 PALMDQ9NP74 551 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 ZC4H2Q9NQZ6 224 aa16.96■□□□□ 0.31
CLN3-232ENST00000568443 SNAPC5O75971 98 aa16.95■□□□□ 0.3
CLN3-232ENST00000568443 IFNA6P05013 189 aa16.95■□□□□ 0.3
CLN3-232ENST00000568443 SERPINE2P07093 398 aa16.95■□□□□ 0.3
CLN3-232ENST00000568443 CD7P09564 240 aa16.95■□□□□ 0.3
CLN3-232ENST00000568443 PTBP1P26599 531 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLN3-232ENST00000568443 GDPD1Q8N9F7 314 aa16.95■□□□□ 0.3
CLN3-232ENST00000568443 ZNF502Q8TBZ5 544 aa16.95■□□□□ 0.3
CLN3-232ENST00000568443 CACNG8Q8WXS5 425 aa16.95■□□□□ 0.3
CLN3-232ENST00000568443 A8MWP6 167 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 HPGDSO60760 199 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 ELK1P19419 428 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 GPR183P32249 361 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 G6PCP35575 357 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 RORCP51449 518 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 ZNF585BQ52M93 769 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 PHLDA2Q53GA4 152 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 SLC25A24Q6NUK1 477 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 PLET1Q6UQ28 207 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 CADM3Q8N126 398 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 UXS1Q8NBZ7 420 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 ISOC1Q96CN7 298 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 WDR89Q96FK6 387 aaPredicted RBP16.94■□□□□ 0.3
CLN3-232ENST00000568443 NDUFA4L2Q9NRX3 87 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 NSG2Q9Y328 171 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 OR51B2Q9Y5P1 312 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 CEPT1Q9Y6K0 416 aa16.94■□□□□ 0.3
CLN3-232ENST00000568443 TMEM213A2RRL7 107 aa16.93■□□□□ 0.3
CLN3-232ENST00000568443 RCVRNP35243 200 aa16.93■□□□□ 0.3
CLN3-232ENST00000568443 WT1-ASQ06250 92 aa16.93■□□□□ 0.3
CLN3-232ENST00000568443 ZNF57Q68EA5 555 aaPredicted RBP16.93■□□□□ 0.3
CLN3-232ENST00000568443 DEFB125Q8N687 156 aa16.93■□□□□ 0.3
CLN3-232ENST00000568443 VN1R17PQ8TDU5 208 aa16.93■□□□□ 0.3
CLN3-232ENST00000568443 SELENOKQ9Y6D0 94 aa16.93■□□□□ 0.3
CLN3-232ENST00000568443 OR11H12B2RN74 326 aa16.92■□□□□ 0.3
CLN3-232ENST00000568443 TM4SF20Q53R12 229 aa16.92■□□□□ 0.3
CLN3-232ENST00000568443 MZT2AQ6P582 158 aa16.92■□□□□ 0.3
CLN3-232ENST00000568443 LSM10Q969L4 123 aaKnown RBP16.92■□□□□ 0.3
CLN3-232ENST00000568443 EDA2RQ9HAV5 297 aa16.92■□□□□ 0.3
CLN3-232ENST00000568443 FKBP11Q9NYL4 201 aa16.92■□□□□ 0.3
CLN3-232ENST00000568443 MLXQ9UH92 298 aa16.92■□□□□ 0.3
CLN3-232ENST00000568443 PRNDQ9UKY0 176 aa16.92■□□□□ 0.3
CLN3-232ENST00000568443 FAM25AB3EWG3 89 aa16.91■□□□□ 0.3
CLN3-232ENST00000568443 FAM25CB3EWG5 89 aa16.91■□□□□ 0.3
CLN3-232ENST00000568443 FAM25GB3EWG6 89 aa16.91■□□□□ 0.3
CLN3-232ENST00000568443 UNQ9165/PRO28630Q6UXU0 137 aa16.91■□□□□ 0.3
CLN3-232ENST00000568443 LINC00322Q6ZN03 302 aaPredicted RBP16.91■□□□□ 0.3
CLN3-232ENST00000568443 SLC16A13Q7RTY0 426 aa16.91■□□□□ 0.3
CLN3-232ENST00000568443 TMEM61Q8N0U2 210 aa16.91■□□□□ 0.3
CLN3-232ENST00000568443 TSC22D3Q99576 134 aa16.91■□□□□ 0.3
CLN3-232ENST00000568443 FAM212BQ9NTI7 297 aaPredicted RBP16.91■□□□□ 0.3
CLN3-232ENST00000568443 IGHV3-35A0A0C4DH35 117 aa16.9■□□□□ 0.3
CLN3-232ENST00000568443 TBC1D26Q86UD7 250 aa16.9■□□□□ 0.3
CLN3-232ENST00000568443 MARC2Q969Z3 335 aa16.9■□□□□ 0.3
CLN3-232ENST00000568443 TMEM56Q96MV1 263 aa16.9■□□□□ 0.3
CLN3-232ENST00000568443 SRD5A3Q9H8P0 318 aa16.9■□□□□ 0.3
CLN3-232ENST00000568443 UFC1Q9Y3C8 167 aa16.9■□□□□ 0.3
CLN3-232ENST00000568443 F11RQ9Y624 299 aaKnown RBP16.9■□□□□ 0.3
CLN3-232ENST00000568443 TGOLN2O43493 480 aa16.89■□□□□ 0.29
CLN3-232ENST00000568443 ELLP55199 621 aaPredicted RBP16.89■□□□□ 0.29
CLN3-232ENST00000568443 UCP3P55916 312 aa16.89■□□□□ 0.29
CLN3-232ENST00000568443 ZFAND6Q6FIF0 208 aa16.89■□□□□ 0.29
CLN3-232ENST00000568443 SLC38A6Q8IZM9 456 aa16.89■□□□□ 0.29
CLN3-232ENST00000568443 OR5B3Q8NH48 314 aa16.89■□□□□ 0.29
CLN3-232ENST00000568443 AP3S1Q92572 193 aa16.89■□□□□ 0.29
CLN3-232ENST00000568443 WFDC10AQ9H1F0 79 aa16.89■□□□□ 0.29
CLN3-232ENST00000568443 MRPL27Q9P0M9 148 aaKnown RBP16.89■□□□□ 0.29
CLN3-232ENST00000568443 RBMY1BA6NDE4 496 aaKnown RBP16.88■□□□□ 0.29
CLN3-232ENST00000568443 RBMY1EA6NEQ0 496 aaKnown RBP16.88■□□□□ 0.29
CLN3-232ENST00000568443 OR2T8A6NH00 312 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 SCAF4O95104 1147 aaKnown RBP16.88■□□□□ 0.29
CLN3-232ENST00000568443 RBMY1DP0C7P1 496 aaKnown RBP16.88■□□□□ 0.29
CLN3-232ENST00000568443 C8orf88P0DMB2 117 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 ANKRD55Q3KP44 614 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 BTNL8Q6UX41 500 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 OR52B4Q8NGK2 314 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 OR1L6Q8NGR2 347 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 HIPK2Q9H2X6 1198 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 TMEM14BQ9NUH8 114 aa16.88■□□□□ 0.29
CLN3-232ENST00000568443 IGHV3-21A0A0B4J1V1 117 aa16.87■□□□□ 0.29
CLN3-232ENST00000568443 M0QYG6 137 aa16.87■□□□□ 0.29
CLN3-232ENST00000568443 ZNF182P17025 639 aaPredicted RBP16.87■□□□□ 0.29
CLN3-232ENST00000568443 MFAP2P55001 183 aa16.87■□□□□ 0.29
CLN3-232ENST00000568443 CTF1Q16619 201 aa16.87■□□□□ 0.29
CLN3-232ENST00000568443 RNASE12Q5GAN4 147 aaKnown RBP16.87■□□□□ 0.29
CLN3-232ENST00000568443 SPSB3Q6PJ21 355 aa16.87■□□□□ 0.29
CLN3-232ENST00000568443 RBPMS2Q6ZRY4 209 aaKnown RBP16.87■□□□□ 0.29
CLN3-232ENST00000568443 H2BFWTQ7Z2G1 175 aa16.87■□□□□ 0.29
CLN3-232ENST00000568443 OR4A16Q8NH70 328 aa16.87■□□□□ 0.29
CLN3-232ENST00000568443 BSCL2Q96G97 398 aaPredicted RBP16.87■□□□□ 0.29
CLN3-232ENST00000568443 ZNF436Q9C0F3 470 aaPredicted RBP16.87■□□□□ 0.29
CLN3-232ENST00000568443 NAA50Q9GZZ1 169 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms