RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 HRASLSQ9HDD0 168 aa11.15□□□□□ -0.62
CLN3-228ENST00000567804 TRAV3A0A0B4J244 114 aa11.14□□□□□ -0.63
CLN3-228ENST00000567804 SULT1C2O00338 296 aa11.14□□□□□ -0.63
CLN3-228ENST00000567804 ELK1P19419 428 aa11.14□□□□□ -0.63
CLN3-228ENST00000567804 GPR183P32249 361 aa11.14□□□□□ -0.63
CLN3-228ENST00000567804 ELLP55199 621 aaPredicted RBP11.14□□□□□ -0.63
CLN3-228ENST00000567804 CATR1Q13166 79 aa11.14□□□□□ -0.63
CLN3-228ENST00000567804 SRSF8Q9BRL6 282 aaKnown RBP11.14□□□□□ -0.63
CLN3-228ENST00000567804 MRPL27Q9P0M9 148 aaKnown RBP11.14□□□□□ -0.63
CLN3-228ENST00000567804 FRAS1Q86XX4 4008 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 UPK2O00526 184 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 HPRT1P00492 218 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 APOA1P02647 267 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 NQO2P16083 231 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 ZNF585BQ52M93 769 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 RBPMS2Q6ZRY4 209 aaKnown RBP11.13□□□□□ -0.63
CLN3-228ENST00000567804 OR1L6Q8NGR2 347 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 ZNF436Q9C0F3 470 aaPredicted RBP11.13□□□□□ -0.63
CLN3-228ENST00000567804 COMMD5Q9GZQ3 224 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 SLC5A7Q9GZV3 580 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 THYN1Q9P016 225 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 UFC1Q9Y3C8 167 aa11.13□□□□□ -0.63
CLN3-228ENST00000567804 IGHV3-35A0A0C4DH35 117 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 FGF2P09038 288 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 ZNF182P17025 639 aaPredicted RBP11.12□□□□□ -0.63
CLN3-228ENST00000567804 PTBP1P26599 531 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLN3-228ENST00000567804 RPL5P46777 297 aaKnown RBP11.12□□□□□ -0.63
CLN3-228ENST00000567804 FXYD4P59646 89 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 PLET1Q6UQ28 207 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 ZNF818PQ6ZRF7 136 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 OR10W1Q8NGF6 305 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 TMEM190Q8WZ59 177 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 LINC00476Q8WZB0 136 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 QTRT1Q9BXR0 403 aaKnown RBP11.12□□□□□ -0.63
CLN3-228ENST00000567804 TMEM140Q9NV12 185 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 ANAPC10Q9UM13 185 aa11.12□□□□□ -0.63
CLN3-228ENST00000567804 KMT2AQ03164 3969 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 TGOLN2O43493 480 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 S1PR2O95136 353 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 CBX5P45973 191 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 THOC7Q6I9Y2 204 aaKnown RBP11.11□□□□□ -0.63
CLN3-228ENST00000567804 SNX29P2Q8IUI4 249 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 OR2C3Q8N628 320 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 GDPD1Q8N9F7 314 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 DMBX1Q8NFW5 382 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 OR51H1Q8NH63 302 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 VN1R17PQ8TDU5 208 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 RAB2BQ8WUD1 216 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 GIMAP1Q8WWP7 306 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 CMTM3Q96MX0 182 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 SPAG8Q99932 426 aaPredicted RBP11.11□□□□□ -0.63
CLN3-228ENST00000567804 MIXL1Q9H2W2 232 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 C5orf66Q9H5L9 145 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 PLEKHA2Q9HB19 425 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 IFT46Q9NQC8 304 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 COMMD9Q9P000 198 aa11.11□□□□□ -0.63
CLN3-228ENST00000567804 DNAH10Q8IVF4 4471 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 TMBIM6P55061 237 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 TMEM17Q86X19 198 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 WFDC3Q8IUB2 231 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 OR5AP2Q8NGF4 316 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 CD300LFQ8TDQ1 290 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 GPX8Q8TED1 209 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 TP53TG1Q9Y2A0 90 aa11.1□□□□□ -0.63
CLN3-228ENST00000567804 A0A0J9YWU9 116 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 FAM25AB3EWG3 89 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 FAM25CB3EWG5 89 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 FAM25GB3EWG6 89 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 H3BMQ9 156 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 TSPAN4O14817 238 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 CYB5BO43169 146 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 SERPINE2P07093 398 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 TRAPPC2P0DI81 140 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 TRAPPC2BP0DI82 140 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 RPA2P15927 270 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 NAT1P18440 290 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 PRSS3P35030 304 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 RFX2P48378 723 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 APOC4P55056 127 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 EWSR1Q01844 656 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLN3-228ENST00000567804 WT1-ASQ06250 92 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 PMS2P11Q13670 270 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 AADACL3Q5VUY0 350 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 MZT2AQ6P582 158 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 Q6ZWC4 215 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 HSD17B13Q7Z5P4 300 aaPredicted RBP11.09□□□□□ -0.63
CLN3-228ENST00000567804 SLC38A6Q8IZM9 456 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 DYNC2LI1Q8TCX1 351 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 AP3S1Q92572 193 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 DAZ1Q9NQZ3 744 aaKnown RBP11.09□□□□□ -0.63
CLN3-228ENST00000567804 UBQLN2Q9UHD9 624 aa11.09□□□□□ -0.63
CLN3-228ENST00000567804 TEX50A0A1B0GTY4 177 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 SMIM31A0A1B0GVY4 71 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 CXorf65A6NEN9 183 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 OR2T8A6NH00 312 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 CTDSP2O14595 271 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 SPRY2O43597 315 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 PMP2P02689 132 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 OR13C7P0DN81 318 aa11.08□□□□□ -0.64
CLN3-228ENST00000567804 GNRHRP30968 328 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms