RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	LPCAT3	Q6P1A2	487 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	SPSB3	Q6PJ21	355 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	C19orf35	Q6ZS72	473 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	SLC38A6	Q8IZM9	456 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	OR5H2	Q8NGV7	314 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	OR6F1	Q8NGZ6	308 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	MOB3A	Q96BX8	217 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	GAR1	Q9NY12	217 aa	Known RBP	11.2	□□□□□ -0.62
CLN3-222	ENST00000566083		S4R3C0	116 aa		11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	EPPK1	P58107	5090 aa	Known RBP	11.2	□□□□□ -0.62
CLN3-222	ENST00000566083	MFSD2B	A6NFX1	497 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	SNAPC5	O75971	98 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	S1PR2	O95136	353 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	SERPINE2	P07093	398 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	GPR183	P32249	361 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	LSM10	Q969L4	123 aa	Known RBP	11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	BSCL2	Q96G97	398 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	TSC22D3	Q99576	134 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	ZNF2	Q9BSG1	426 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	GGTLC1	Q9BX51	225 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	C5orf66	Q9H5L9	145 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	FAM212B	Q9NTI7	297 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	MLX	Q9UH92	298 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	ANAPC10	Q9UM13	185 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	BIRC6	Q9NR09	4857 aa		11.19	□□□□□ -0.62
CLN3-222	ENST00000566083	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	GPR31	O00270	319 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	TGOLN2	O43493	480 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	PGLYRP1	O75594	196 aa	Predicted RBP	11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	OR13C7	P0DN81	318 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	NAT1	P18440	290 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	PRSS3	P35030	304 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	ZNF585B	Q52M93	769 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	LAMTOR1	Q6IAA8	161 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	SLC25A24	Q6NUK1	477 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	SAMD12	Q8N8I0	201 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	OR5B3	Q8NH48	314 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	CACNG8	Q8WXS5	425 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	DGCR14	Q96DF8	476 aa	Known RBP	11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	TMEM56	Q96MV1	263 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	CMTM3	Q96MX0	182 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	SPAG8	Q99932	426 aa	Predicted RBP	11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	DAZ1	Q9NQZ3	744 aa	Known RBP	11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	PRND	Q9UKY0	176 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	TRAV3	A0A0B4J244	114 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	TEX50	A0A1B0GTY4	177 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	SMIM31	A0A1B0GVY4	71 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	MEIS3P1	A6NDR6	274 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	SCAF4	O95104	1147 aa	Known RBP	11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	RLN1	P04808	185 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	FCER2	P06734	321 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	RFX2	P48378	723 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	TM4SF20	Q53R12	229 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	BTNL8	Q6UX41	500 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	RETN	Q9HD89	108 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	NDUFA4L2	Q9NRX3	87 aa		11.18	□□□□□ -0.62
CLN3-222	ENST00000566083	F11R	Q9Y624	299 aa	Known RBP	11.18	□□□□□ -0.62
CLN3-222	ENST00000566083		A0A087WXM4	84 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	NDUFA4	O00483	81 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	RPS19	P39019	145 aa	Known RBP	11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	LPAR6	P43657	344 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	TAS2R20	P59543	309 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	UNQ9165/PRO28630	Q6UXU0	137 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	OR2C3	Q8N628	320 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	OR10W1	Q8NGF6	305 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	TMEM190	Q8WZ59	177 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	LYST	Q99698	3801 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	FAM110A	Q9BQ89	295 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	WFDC10A	Q9H1F0	79 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083	C21orf62	Q9NYP8	219 aa		11.17	□□□□□ -0.62
CLN3-222	ENST00000566083		K7EMT4	169 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	TSPAN4	O14817	238 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	KRAS	P01116	189 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	PMP2	P02689	132 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	EDN2	P20800	178 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	APOC4	P55056	127 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	TSPAN5	P62079	268 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	WT1-AS	Q06250	92 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	FCAMR	Q8WWV6	532 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	HINT2	Q9BX68	163 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	SCPEP1	Q9HB40	452 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	OR51B2	Q9Y5P1	312 aa		11.16	□□□□□ -0.62
CLN3-222	ENST00000566083	UBE2C	O00762	179 aa		11.15	□□□□□ -0.62
CLN3-222	ENST00000566083		Q6ZWC4	215 aa		11.15	□□□□□ -0.62
CLN3-222	ENST00000566083	SLC25A46	Q96AG3	418 aa		11.15	□□□□□ -0.62
CLN3-222	ENST00000566083	TP53TG1	Q9Y2A0	90 aa		11.15	□□□□□ -0.62
CLN3-222	ENST00000566083	OR2T8	A6NH00	312 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	OR4C46	A6NHA9	309 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	TNFAIP8	O95379	198 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	APOA1	P02647	267 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	RPA2	P15927	270 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	HRH1	P35367	487 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	G6PC	P35575	357 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	CMC4	P56277	68 aa	Predicted RBP	11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	REL	Q04864	619 aa	Predicted RBP	11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	OR1P1	Q8NH06	330 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	SCARB1	Q8WTV0	552 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	YIPF6	Q96EC8	236 aa		11.14	□□□□□ -0.63
CLN3-222	ENST00000566083	TMEM14B	Q9NUH8	114 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms