RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 GGTLC1Q9BX51 225 aa8.68□□□□□ -1.02
USP3-214ENST00000559718 LOC102724200A0A096LPH7 203 aaPredicted RBP8.67□□□□□ -1.02
USP3-214ENST00000559718 IGHV3-21A0A0B4J1V1 117 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 ATP6V1G2O95670 118 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 PTBP1P26599 531 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP3-214ENST00000559718 GNRHRP30968 328 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 TGFBR1P36897 503 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 SCAND1P57086 179 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 CATR1Q13166 79 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 AADACL3Q5VUY0 350 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 PLET1Q6UQ28 207 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 DMBX1Q8NFW5 382 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 OR5AP2Q8NGF4 316 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 AIFM2Q9BRQ8 373 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 QTRT1Q9BXR0 403 aaKnown RBP8.67□□□□□ -1.02
USP3-214ENST00000559718 YTHDF1Q9BYJ9 559 aaKnown RBP8.67□□□□□ -1.02
USP3-214ENST00000559718 COMMD5Q9GZQ3 224 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 DIABLOQ9NR28 239 aa8.67□□□□□ -1.02
USP3-214ENST00000559718 ALMS1Q8TCU4 4167 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 IGHV3OR16-8A0A075B7F1 116 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 A0A0A6YYH2 397 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 TEX50A0A1B0GTY4 177 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 OR2T8A6NH00 312 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 A6NJ64 397 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 OR13C7P0DN81 318 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 RFX2P48378 723 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 MFAP2P55001 183 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 EWSR1Q01844 656 aaKnown RBP eCLIP8.66□□□□□ -1.02
USP3-214ENST00000559718 WT1-ASQ06250 92 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 NEDD8Q15843 81 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 ANKRD55Q3KP44 614 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 RBPMS2Q6ZRY4 209 aaKnown RBP8.66□□□□□ -1.02
USP3-214ENST00000559718 GDPD1Q8N9F7 314 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 OR1L6Q8NGR2 347 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 MARC2Q969Z3 335 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 SRSF8Q9BRL6 282 aaKnown RBP8.66□□□□□ -1.02
USP3-214ENST00000559718 ZNF436Q9C0F3 470 aaPredicted RBP8.66□□□□□ -1.02
USP3-214ENST00000559718 PLEKHA2Q9HB19 425 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 EHFQ9NZC4 300 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 MRPL27Q9P0M9 148 aaKnown RBP8.66□□□□□ -1.02
USP3-214ENST00000559718 UBQLN2Q9UHD9 624 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 NSG2Q9Y328 171 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 UFC1Q9Y3C8 167 aa8.66□□□□□ -1.02
USP3-214ENST00000559718 TRAV25A0A0B4J276 109 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 TGOLN2O43493 480 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 PGLYRP1O75594 196 aaPredicted RBP8.65□□□□□ -1.02
USP3-214ENST00000559718 PMP2P02689 132 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 RLN1P04808 185 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 SERPINE2P07093 398 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 TRAPPC2P0DI81 140 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 TRAPPC2BP0DI82 140 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 CBX5P45973 191 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 HERV-K104P61576 105 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 SLC25A24Q6NUK1 477 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 VN1R17PQ8TDU5 208 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 FCAMRQ8WWV6 532 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 TMEM190Q8WZ59 177 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 CHRDL1Q9BU40 450 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 HINT2Q9BX68 163 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 Q9H521 79 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 IFT46Q9NQC8 304 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 COMMD9Q9P000 198 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 THYN1Q9P016 225 aa8.65□□□□□ -1.02
USP3-214ENST00000559718 A0A0J9YWU9 116 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 MARCH11A6NNE9 402 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 F8W735 103 aaPredicted RBP8.64□□□□□ -1.03
USP3-214ENST00000559718 XRCC3O43542 346 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 ZNF207O43670 478 aaKnown RBP8.64□□□□□ -1.03
USP3-214ENST00000559718 G6PCP35575 357 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 LPAR6P43657 344 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 ELLP55199 621 aaPredicted RBP8.64□□□□□ -1.03
USP3-214ENST00000559718 ERVK-16P61578 105 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 PMS2P11Q13670 270 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 DHRS11Q6UWP2 260 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 OR2C3Q8N628 320 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 OR1L8Q8NGR8 309 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 CD300LFQ8TDQ1 290 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 MOB3AQ96BX8 217 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 ZNF2Q9BSG1 426 aaPredicted RBP8.64□□□□□ -1.03
USP3-214ENST00000559718 C20orf24Q9BUV8 137 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 C5orf66Q9H5L9 145 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 NDUFA4L2Q9NRX3 87 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 ANAPC10Q9UM13 185 aa8.64□□□□□ -1.03
USP3-214ENST00000559718 DBX1A6NMT0 343 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 K7EIM0 57 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 TSPAN4O14817 238 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 KRASP01116 189 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 FGF2P09038 288 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 H2AFB1P0C5Y9 115 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 H2AFB2P0C5Z0 115 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 F2RP25116 425 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 ADMP35318 185 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 TAS2R20P59543 309 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 DEFB135Q30KP9 77 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 ODF3L2Q3SX64 289 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 SCARB1Q8WTV0 552 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 DGCR14Q96DF8 476 aaKnown RBP8.63□□□□□ -1.03
USP3-214ENST00000559718 BSCL2Q96G97 398 aaPredicted RBP8.63□□□□□ -1.03
USP3-214ENST00000559718 ZNF414Q96IQ9 312 aa8.63□□□□□ -1.03
USP3-214ENST00000559718 SPAG8Q99932 426 aaPredicted RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms