RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ST8SIA3O43173 380 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 ELANEP08246 267 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 HIST1H1BP16401 226 aaKnown RBP7.27□□□□□ -1.25
LDLR-210ENST00000559340 MDKP21741 143 aaPredicted RBP7.27□□□□□ -1.25
LDLR-210ENST00000559340 SUB1P53999 127 aaKnown RBP eCLIP7.27□□□□□ -1.259e-7■■■□□ 17.7
LDLR-210ENST00000559340 CYCSP99999 105 aaKnown RBP7.27□□□□□ -1.25
LDLR-210ENST00000559340 PRCDQ00LT1 54 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 ECSCRQ19T08 205 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 MRGPRG-AS1Q2M3A8 158 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 AWAT1Q58HT5 328 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 CXorf66Q5JRM2 361 aaPredicted RBP7.27□□□□□ -1.25
LDLR-210ENST00000559340 TMEM65Q6PI78 240 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 NOXA1Q86UR1 476 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 TTC9CQ8N5M4 171 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 OR5AU1Q8NGC0 362 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 WNT10AQ9GZT5 417 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 HIPK2Q9H2X6 1198 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 PLEKHA3Q9HB20 300 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 NDUFA4L2Q9NRX3 87 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 WSB1Q9Y6I7 421 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 A0A0G2JRQ6 117 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 LINC01548A6NM66 108 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 NPIPB5A8MRT5 1133 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 FAM25EA8MYX2 175 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 WRBO00258 174 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 OPN1MWP04001 364 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 OPN1MW2P0DN77 364 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 OPN1MW3P0DN78 364 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 EGR2P11161 476 aaPredicted RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 DEFA4P12838 97 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 SNCAP37840 140 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 HOXA1P49639 335 aaPredicted RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 ATP5IP56385 69 aaPredicted RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 PROK1P58294 105 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 RPP30P78346 268 aaKnown RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 FOXE3Q13461 319 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 IAH1Q2TAA2 248 aaPredicted RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 AARDQ4LEZ3 155 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 KLHDC1Q8N7A1 406 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 C3orf56Q8N813 242 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 FAM110DQ8TAY7 271 aaPredicted RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 WFDC12Q8WWY7 111 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 C2orf50Q96LR7 162 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 NOL4LQ96MY1 436 aaPredicted RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 CIB3Q96Q77 187 aaPredicted RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 FAM103A1Q9BTL3 118 aaKnown RBP7.26□□□□□ -1.25
LDLR-210ENST00000559340 MED28Q9H204 178 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 SLA2Q9H6Q3 261 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 ZNF355PQ9NSJ1 428 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 THYN1Q9P016 225 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 ALG5Q9Y673 324 aa7.26□□□□□ -1.25
LDLR-210ENST00000559340 WNK1Q9H4A3 2382 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 A0A0G2JLM5 398 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 INS-IGF2F8WCM5 200 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 G3V318 75 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 PITX3O75364 302 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 FBXO24O75426 580 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 ADAP1O75689 374 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 BRI3O95415 125 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 IGHG4P01861 327 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 CRYGCP07315 174 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 OR13C7P0DN81 318 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 PF4V1P10720 104 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 PSMB6P28072 239 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 PPIFP30405 207 aaKnown RBP7.25□□□□□ -1.25
LDLR-210ENST00000559340 NKX2-1P43699 371 aaPredicted RBP7.25□□□□□ -1.25
LDLR-210ENST00000559340 SSBP2P81877 361 aaPredicted RBP7.25□□□□□ -1.25
LDLR-210ENST00000559340 NDPQ00604 133 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 TNFRSF9Q07011 255 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 IZUMO4Q1ZYL8 232 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 TMEM95Q3KNT9 176 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 PDLIM3Q53GG5 364 aaPredicted RBP7.25□□□□□ -1.25
LDLR-210ENST00000559340 FAM209BQ5JX69 171 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 C10orf55Q5SWW7 151 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 Q6ZRM9 215 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 ZBTB8BQ8NAP8 495 aaPredicted RBP7.25□□□□□ -1.25
LDLR-210ENST00000559340 OR5T1Q8NG75 326 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 HEYLQ9NQ87 328 aaPredicted RBP7.25□□□□□ -1.25
LDLR-210ENST00000559340 GSKIPQ9P0R6 139 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 HSPB7Q9UBY9 170 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 LINC00527Q9UJ94 153 aa7.25□□□□□ -1.25
LDLR-210ENST00000559340 TCRBV4S1A1TA0A5B7 111 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 HMX3A6NHT5 357 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 TEX22C9J3V5 150 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 CORTO00230 105 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 GOSR2O14653 212 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 RLN2P04090 185 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 CTRB1P17538 263 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 PVALBP20472 110 aaPredicted RBP7.24□□□□□ -1.25
LDLR-210ENST00000559340 HTR2BP41595 481 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 C19orf54Q5BKX5 351 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 CTRB2Q6GPI1 263 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 ZNF329Q86UD4 541 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 OR2C3Q8N628 320 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 ASB13Q8WXK3 278 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 USMG5Q96IX5 58 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 ZNF747Q9BV97 191 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 MGAT4CQ9UBM8 478 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 FBXO7Q9Y3I1 522 aa7.24□□□□□ -1.25
LDLR-210ENST00000559340 U3KQ87 197 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms