RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 IGHV2-5P01817 119 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 C1QBP02746 253 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 OR5AC1P0C628 307 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 STAG3L3P0CL85 134 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 IGHV1-8P0DP01 117 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 LYNX1P0DP58 116 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 PVALBP20472 110 aaPredicted RBP4.13□□□□□ -1.75
LDLR-209ENST00000558528 PRTN3P24158 256 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 NFYBP25208 207 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 ERVK-16P61578 105 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 GAGE5Q13069 117 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 GAGE6Q13070 117 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 TMEM187Q14656 261 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 SLC9A3R2Q15599 337 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 KRTAP19-4Q3LI73 84 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 AVPI1Q5T686 147 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 C10orf25Q5T742 122 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 PRAMEF5Q5TYX0 476 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 Q6ZPA2 131 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 ZNF818PQ6ZRF7 136 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 SLC25A48Q6ZT89 311 aaKnown RBP4.13□□□□□ -1.75
LDLR-209ENST00000558528 Q71RC1 249 aaPredicted RBP4.13□□□□□ -1.75
LDLR-209ENST00000558528 ABHD12Q8N2K0 398 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 DRAM1Q8N682 238 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 TEX29Q8N6K0 151 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 OR10X1Q8NGY0 326 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 RNASE11Q8TAA1 199 aaKnown RBP4.13□□□□□ -1.75
LDLR-209ENST00000558528 C10orf105Q8TEF2 133 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 GLYATL2Q8WU03 294 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 CAPSLQ8WWF8 208 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 DPF1Q92782 380 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 RBPMSQ93062 196 aaKnown RBP4.13□□□□□ -1.75
LDLR-209ENST00000558528 LSM10Q969L4 123 aaKnown RBP4.13□□□□□ -1.75
LDLR-209ENST00000558528 TMEM230Q96A57 120 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 MRGPRFQ96AM1 343 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 URB1-AS1Q96HZ7 61 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 ABHD14BQ96IU4 210 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 RNF5Q99942 180 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 SMR3AQ99954 134 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 TMEM222Q9H0R3 208 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 OR2D2Q9H210 308 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 TMEM133Q9H2Q1 129 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 OR1A1Q9P1Q5 309 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 CTSZQ9UBR2 303 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 RPH3ALQ9UNE2 315 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 PSG11Q9UQ72 335 aa4.13□□□□□ -1.75
LDLR-209ENST00000558528 INTS1Q8N201 2190 aaKnown RBP4.13□□□□□ -1.75
LDLR-209ENST00000558528 IGHV3-43A0A0B4J1X8 118 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 IGKV1D-13A0A0B4J2D9 117 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 A0A1B0GU03 582 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 HMSDA8MTL9 139 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 LEUTXA8MZ59 168 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 MED6O75586 246 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 IGHV4-39P01824 125 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 APOA2P02652 100 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 GAPDHP04406 335 aaKnown RBP4.12□□□□□ -1.75
LDLR-209ENST00000558528 IGHV3-43DP0DP04 118 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 IGHV4-31P0DP07 118 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 IGKV1-13P0DP09 117 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 HNF1AP20823 631 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 USF1P22415 310 aaPredicted RBP4.12□□□□□ -1.75
LDLR-209ENST00000558528 PSMB6P28072 239 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 PPP1CCP36873 323 aaKnown RBP4.12□□□□□ -1.75
LDLR-209ENST00000558528 EIF2B2P49770 351 aaKnown RBP4.12□□□□□ -1.75
LDLR-209ENST00000558528 RAB13P51153 203 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 ZNF137PP52743 207 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 SUPT4H1P63272 117 aaKnown RBP4.12□□□□□ -1.75
LDLR-209ENST00000558528 EXOSC2Q13868 293 aaKnown RBP4.12□□□□□ -1.75
LDLR-209ENST00000558528 GNMTQ14749 295 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 LTC4SQ16873 150 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 RTL8BQ17RB0 113 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 CLEC12BQ2HXU8 276 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 DEFB113Q30KQ7 82 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 CT45A1Q5HYN5 189 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 MINOS1Q5TGZ0 78 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 LYG1Q8N1E2 194 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 ZNF525Q8N782 197 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 KLHDC1Q8N7A1 406 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 OR11H7Q8NGC8 314 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 OR2T35Q8NGX2 323 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 OR51H1Q8NH63 302 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 OR4S2Q8NH73 311 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 PRSS3P2Q8NHM4 247 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 CT45A3Q8NHU0 189 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 VSTM2AQ8TAG5 236 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 TCTEX1D2Q8WW35 142 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 ST6GAL2Q96JF0 529 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 C18orf12Q96KH6 178 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 CLCC1Q96S66 551 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 AGMATQ9BSE5 352 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 CLEC7AQ9BXN2 247 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 GON7Q9BXV9 100 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 BPESC1Q9GZL8 116 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 LIME1Q9H400 295 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 C19orf12Q9NSK7 152 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 SDHAF2Q9NX18 166 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 FKBP11Q9NYL4 201 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 MINOS1-NBL1R4GNA1 71 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 HIVEP2P31629 2446 aa4.12□□□□□ -1.75
LDLR-209ENST00000558528 ZGRF1Q86YA3 2104 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms