RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 HMGB3O15347 200 aaKnown RBP6.81□□□□□ -1.32
SPG11-209ENST00000558253 RBP4P02753 201 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 THBDP07204 575 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 CT45A6P0DMU7 189 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 CT45A5P0DMU8 189 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 CT45A7P0DMV0 189 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 AREGP15514 252 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 USF1P22415 310 aaPredicted RBP6.81□□□□□ -1.32
SPG11-209ENST00000558253 APOBEC3AP31941 199 aaPredicted RBP6.81□□□□□ -1.32
SPG11-209ENST00000558253 ZNF137PP52743 207 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 LCN2P80188 198 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 ERHP84090 104 aaKnown RBP6.81□□□□□ -1.32
SPG11-209ENST00000558253 BSPH1Q075Z2 132 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 ZNF674Q2M3X9 581 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 FBXL19-AS1Q494R0 122 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 NCMAPQ5T1S8 102 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 FAM53AQ6NSI3 398 aaPredicted RBP6.81□□□□□ -1.32
SPG11-209ENST00000558253 SSX7Q7RTT5 188 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 TMEM144Q7Z5S9 345 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 SPACA3Q8IXA5 215 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 Q8N7P7 452 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 Q8NA96 180 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 DEFB108BQ8NET1 73 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 OR5AN1Q8NGI8 311 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 OR4C13Q8NGP0 309 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 OR4F5Q8NH21 305 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 Q8WTZ3 238 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 ZCCHC14Q8WYQ9 949 aaKnown RBP6.81□□□□□ -1.32
SPG11-209ENST00000558253 TMEM190Q8WZ59 177 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 NEUROG1Q92886 237 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 RNASE6Q93091 150 aaKnown RBP6.81□□□□□ -1.32
SPG11-209ENST00000558253 C14orf144Q96I85 54 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 UHRF2Q96PU4 802 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 OR4F4Q96R69 305 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 GGTLC1Q9BX51 225 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 PARLQ9H300 379 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 SRD5A3Q9H8P0 318 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 TMEM167BQ9NRX6 74 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 PXMP4Q9Y6I8 212 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 NCOR1O75376 2440 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 CFAP54Q96N23 3096 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 SPEGQ15772 3267 aa6.81□□□□□ -1.32
SPG11-209ENST00000558253 TRAV9-1A0A075B6T8 112 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 TMEM238LA0A1B0GVL6 79 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 PAGE4O60829 102 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 CA2P00918 260 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 PFN1P07737 140 aaKnown RBP6.8□□□□□ -1.32
SPG11-209ENST00000558253 CD3EP07766 207 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 LGALS7P47929 136 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 COMPP49747 757 aaPredicted RBP6.8□□□□□ -1.32
SPG11-209ENST00000558253 TAS2R45P59539 299 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 RPL23P62829 140 aaKnown RBP6.8□□□□□ -1.32
SPG11-209ENST00000558253 CCL8P80075 99 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 RPL19P84098 196 aaKnown RBP6.8□□□□□ -1.32
SPG11-209ENST00000558253 SPRNQ5BIV9 151 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 TMEM200BQ69YZ2 307 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 TCF23Q7RTU1 214 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 ABHD12Q8N2K0 398 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 FAM216BQ8N7L0 139 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 TMEM167AQ8TBQ9 72 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 RNASEH2CQ8TDP1 164 aaKnown RBP6.8□□□□□ -1.32
SPG11-209ENST00000558253 RPUSD4Q96CM3 377 aaKnown RBP6.8□□□□□ -1.32
SPG11-209ENST00000558253 FLYWCH2Q96CP2 140 aaKnown RBP6.8□□□□□ -1.32
SPG11-209ENST00000558253 NEU1Q99519 415 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 MGST2Q99735 147 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 LRFN3Q9BTN0 628 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 COMMD5Q9GZQ3 224 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 DYNLRB1Q9NP97 96 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 SLC45A2Q9UMX9 530 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 MSRB2Q9Y3D2 182 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 ZNF318Q5VUA4 2279 aa6.8□□□□□ -1.32
SPG11-209ENST00000558253 VPS13AQ96RL7 3174 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 TEX50A0A1B0GTY4 177 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 PPP5D1E7EU14 171 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 M0QZK8 103 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 DVL1O14640 695 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 GGCTO75223 188 aaKnown RBP6.79□□□□□ -1.32
SPG11-209ENST00000558253 YIF1AO95070 293 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 TYMSP04818 313 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 GALR1P47211 349 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 PRRX1P54821 245 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 FAM3BP58499 235 aaPredicted RBP6.79□□□□□ -1.32
SPG11-209ENST00000558253 LINC00205P59089 165 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 ERVFRD-1P60508 538 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 HOXA4Q00056 320 aaPredicted RBP6.79□□□□□ -1.32
SPG11-209ENST00000558253 FOXL1Q12952 345 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 ADIRFQ15847 76 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 VMA21Q3ZAQ7 101 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 C9orf152Q5JTZ5 239 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 FAM201AQ5SY85 155 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 ETFRF1Q6IPR1 90 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 SPNS3Q6ZMD2 512 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 PQLC2Q6ZP29 291 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 OR51G1Q8NGK1 321 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 OR10X1Q8NGY0 326 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 OR9G1Q8NH87 305 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 C11orf52Q96A22 123 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 SNRNP40Q96DI7 357 aaKnown RBP6.79□□□□□ -1.32
SPG11-209ENST00000558253 ACY3Q96HD9 319 aa6.79□□□□□ -1.32
SPG11-209ENST00000558253 RNF5Q99942 180 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms