RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 EAF1Q96JC9 268 aaPredicted RBP9.06□□□□□ -0.96
USP3-206ENST00000558157 OSTCQ9NRP0 149 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 ERRFI1Q9UJM3 462 aaPredicted RBP9.06□□□□□ -0.96
USP3-206ENST00000558157 ANKRD11Q6UB99 2663 aaPredicted RBP9.06□□□□□ -0.96
USP3-206ENST00000558157 IGF2RP11717 2491 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 SCO2A0A1W2PP80 73 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 FAM181BA6NEQ2 426 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 K7EM74 188 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 K7EN84 100 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 MT-CO2P00403 227 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 IGLC1P0CG04 106 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 AREGP15514 252 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 NPY1RP25929 384 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 PHYHD1Q5SRE7 291 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 MRPL54Q6P161 138 aaKnown RBP9.06□□□□□ -0.96
USP3-206ENST00000558157 OR5A2Q8NGI9 324 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 UCN2Q96RP3 112 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 DEFB127Q9H1M4 99 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 WDR83OSQ9Y284 106 aa9.06□□□□□ -0.96
USP3-206ENST00000558157 OR2T8A6NH00 312 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 CRXO43186 299 aaPredicted RBP9.05□□□□□ -0.96
USP3-206ENST00000558157 PSG9Q00887 426 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 RBPJQ06330 500 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 ZNF718Q3SXZ3 478 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 IGFL3Q6UXB1 125 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 FGFRL1Q8N441 504 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 SLC25A40Q8TBP6 338 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.05□□□□□ -0.96
USP3-206ENST00000558157 WASHC3Q9Y3C0 194 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 MGAQ8IWI9 3026 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 CDIPTO14735 213 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 CXCL13O43927 109 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 OR7C2O60412 319 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 HSBP1O75506 76 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 IGLV2-14P01704 120 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 OPRK1P41145 380 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 TMPRSS3P57727 454 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 RPL31P62899 125 aaKnown RBP9.05□□□□□ -0.96
USP3-206ENST00000558157 KLF5Q13887 457 aaPredicted RBP9.05□□□□□ -0.96
USP3-206ENST00000558157 PSG3Q16557 428 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 SLC25A34Q6PIV7 304 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 GTF2H5Q6ZYL4 71 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 MOB1BQ7L9L4 216 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 ATOH7Q8N100 152 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 Q8N7P7 452 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 OR10D3Q8NH80 312 aa9.05□□□□□ -0.96
USP3-206ENST00000558157 WIPF2Q8TF74 440 aaPredicted RBP9.05□□□□□ -0.96
USP3-206ENST00000558157 URB1O60287 2271 aaKnown RBP9.05□□□□□ -0.96
USP3-206ENST00000558157 LRRC30A6NM36 301 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 NUDT3O95989 172 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 APCSP02743 223 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 P0C879 139 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 NTF3P20783 257 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 SRYQ05066 204 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 IGFBP7Q16270 282 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 FER1L6-AS1Q8NA97 138 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 C18orf32Q8TCD1 76 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 PIGCQ92535 297 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 NCOA6Q14686 2063 aaPredicted RBP9.04□□□□□ -0.96
USP3-206ENST00000558157 ODAMA1E959 279 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 CGAP01215 116 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 ARL14EPLP0DKL9 152 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 CEACAM3P40198 252 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 RAC3P60763 192 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 C3AR1Q16581 482 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 LCN12Q6JVE5 192 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 PRSS57Q6UWY2 283 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 FAM19A2Q8N3H0 131 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 RBMXL3Q8N7X1 1067 aaKnown RBP9.04□□□□□ -0.96
USP3-206ENST00000558157 ZBTB34Q8NCN2 500 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 SPSB4Q96A44 273 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 ULBP2Q9BZM5 246 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 COMMD5Q9GZQ3 224 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 SPRR3Q9UBC9 169 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 NCOR2Q9Y618 2525 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 ZNF407Q9C0G0 2248 aa9.04□□□□□ -0.96
USP3-206ENST00000558157 SPENQ96T58 3664 aaKnown RBP9.03□□□□□ -0.96
USP3-206ENST00000558157 TRGV5A0A0B4J1U4 118 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 TRAV38-1A0A0B4J264 116 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 C2orf70A6NJV1 201 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 M0R2Z0 102 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 ISLRO14498 428 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 DNPH1O43598 174 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 BCL3P20749 454 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 CRYBB3P26998 211 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 UCNP55089 124 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 Q56UQ5 140 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 Q6ZS92 163 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 MKXQ8IYA7 352 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 TMEM70Q9BUB7 260 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 SAP30LQ9HAJ7 183 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 SMPXQ9UHP9 88 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 CACNA1AO00555 2505 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 SMIM27A0A1W2PRY6 76 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 SMIM17P0DL12 118 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 SEC11AP67812 179 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 HIST1H1AQ02539 215 aaPredicted RBP9.03□□□□□ -0.96
USP3-206ENST00000558157 MRPL49Q13405 166 aaKnown RBP9.03□□□□□ -0.96
USP3-206ENST00000558157 ABHD17AQ96GS6 310 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 OR2D2Q9H210 308 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms