RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CLIP1P30622 1438 aa1.97□□□□□ -2.09
TRAV28-201ENST00000557548 CEP162Q5TB80 1403 aa1.97□□□□□ -2.09
TRAV28-201ENST00000557548 LTN1O94822 1766 aa1.97□□□□□ -2.09
TRAV28-201ENST00000557548 NAV1Q8NEY1 1877 aa1.97□□□□□ -2.09
TRAV28-201ENST00000557548 TRPM2O94759 1503 aa1.96□□□□□ -2.09
TRAV28-201ENST00000557548 DUOX2Q9NRD8 1548 aa1.96□□□□□ -2.09
TRAV28-201ENST00000557548 TOPAZ1Q8N9V7 1692 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 TP53BP1Q12888 1972 aaPredicted RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 SCAF11Q99590 1463 aaKnown RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 COL18A1P39060 1754 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 BAZ2AQ9UIF9 1905 aaKnown RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 IGLV3-16A0A075B6K0 115 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 TRAV26-2A0A0B4J265 109 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 A0A1B0GX51 115 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 TMEM189A5PLL7 270 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 KNCNA6PVL3 124 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 ZNF850A8MQ14 1090 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 F5H5P2 479 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 K7ERU9 68 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 RGS5O15539 181 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 BANF1O75531 89 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 S100A8P05109 93 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 CISD3P0C7P0 127 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 UBBP0CG47 229 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 CD200P41217 278 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 BTN1A1Q13410 526 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 JOSD1Q15040 202 aaPredicted RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 OR8B8Q15620 311 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 SP6Q3SY56 376 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 MESTQ5EB52 335 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 ZNF678Q5SXM1 525 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 Q6P435 159 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 TIFABQ6ZNK6 161 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 ATP5L2Q7Z4Y8 100 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 FAM19A3Q7Z5A8 133 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 KRTAP11-1Q8IUC1 163 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 SAXO1Q8IYX7 474 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 ANKRD29Q8N6D5 301 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 Q8N9L7 120 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 SLC25A44Q96H78 314 aaPredicted RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 REEP6Q96HR9 211 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 CCDC115Q96NT0 180 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 LYSMD1Q96S90 227 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 COMMD5Q9GZQ3 224 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 RNASE7Q9H1E1 156 aaKnown RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 UQCC1Q9NVA1 299 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 TMEM38BQ9NVV0 291 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 HSPB8Q9UJY1 196 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 PCYT1BQ9Y5K3 369 aaPredicted RBP1.96□□□□□ -2.1
TRAV28-201ENST00000557548 RFNGQ9Y644 331 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 OVOS2A0A0J9YW53 1432 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 BCL9O00512 1426 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 OVOS2Q6IE36 1432 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 PEAK1Q9H792 1746 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 QRICH2Q9H0J4 1663 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 THSD7AQ9UPZ6 1657 aa1.96□□□□□ -2.1
TRAV28-201ENST00000557548 NKTRP30414 1462 aaKnown RBP1.95□□□□□ -2.1
TRAV28-201ENST00000557548 ITSN1Q15811 1721 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 QSER1Q2KHR3 1735 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 ABCC5O15440 1437 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 NOS1P29475 1434 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 DCCP43146 1447 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 FAM135BQ49AJ0 1406 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 PPIP5K1Q6PFW1 1433 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 SSH2Q76I76 1423 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 TRAV36DV7A0A075B6V5 113 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 A0A096LPI6 279 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 OR5H14A6NHG9 310 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 SIGLEC16A6NMB1 481 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 INMT-MINDY4F8WBC2 141 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 PIRO00625 290 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 TCF21O43680 179 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 PIAS1O75925 651 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 TNFSF15O95150 251 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 HLA-DRB1P01911 266 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 GYPCP04921 128 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 C8GP07360 202 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 LGALS1P09382 135 aaKnown RBP1.95□□□□□ -2.1
TRAV28-201ENST00000557548 TSPAN19P0C672 248 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 MPC1LP0DKB6 136 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 CPMP14384 443 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 ORM2P19652 201 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 NPY1RP25929 384 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 MP68P56378 58 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 GNG2P59768 71 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 RPS20P60866 119 aaKnown RBP1.95□□□□□ -2.1
TRAV28-201ENST00000557548 RRAS2P62070 204 aaPredicted RBP1.95□□□□□ -2.1
TRAV28-201ENST00000557548 RPS28P62857 69 aaKnown RBP1.95□□□□□ -2.1
TRAV28-201ENST00000557548 CAV1Q03135 178 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 EMX2Q04743 252 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 FABP9Q0Z7S8 132 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 BAMBIQ13145 260 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 RHEBQ15382 184 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 KCNJ8Q15842 424 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 LTC4SQ16873 150 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 SCGB2B2Q4G0G5 96 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 ABCA11PQ4W5N1 156 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 LINC00483Q53H64 154 aa1.95□□□□□ -2.1
TRAV28-201ENST00000557548 RNASE10Q5GAN6 216 aaKnown RBP1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms