RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 OR13C8Q8NGS7 320 aa6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 OR2T35Q8NGX2 323 aa6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 MITD1Q8WV92 249 aa6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 FYTTD1Q96QD9 318 aaKnown RBP6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 SULT4A1Q9BR01 284 aa6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF2Q9BSG1 426 aaPredicted RBP6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 TAF9BQ9HBM6 251 aa6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 JPT1Q9UK76 154 aa6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 GPR132Q9UNW8 380 aa6.19□□□□□ -1.42
CCDC88C-214ENST00000557507 C9orf170A2RU37 121 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 SLC25A17O43808 307 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 OR2A4O95047 310 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 SFT2D2O95562 160 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 CA2P00918 260 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 HLA-GP17693 338 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 FCGR2CP31995 323 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 DHODHQ02127 395 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 TMEM267Q0VDI3 215 aaPredicted RBP6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 DHRS2Q13268 280 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 PLGLAQ15195 96 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 AKIRIN2Q53H80 203 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 RPL39P5Q59GN2 51 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 SIGIRRQ6IA17 410 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF767PQ75MW2 155 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 LHFPL1Q86WI0 220 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 OR11H7Q8NGC8 314 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 OR10J5Q8NHC4 309 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 THAP6Q8TBB0 222 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 MARCH1Q8TCQ1 289 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 OR2A7Q96R45 310 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 CLCC1Q96S66 551 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 Q9N2K0 584 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 MBNL3Q9NUK0 354 aaKnown RBP6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF230Q9UIE0 474 aaPredicted RBP6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 ELF5Q9UKW6 265 aaPredicted RBP6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 RNF150Q9ULK6 438 aa6.18□□□□□ -1.42
CCDC88C-214ENST00000557507 C13orf42A0A1B0GVH6 325 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 C5orf51A6NDU8 294 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 HMSDA8MTL9 139 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 H0YJW9 148 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 ST8SIA5O15466 376 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 YPEL1O60688 119 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 NAPSAO96009 420 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 RLN2P04090 185 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 CD7P09564 240 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 CT45A6P0DMU7 189 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 CT45A5P0DMU8 189 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 CT45A7P0DMV0 189 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 NFYAP23511 347 aaPredicted RBP6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 ZBTB25P24278 435 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 SSBP2P81877 361 aaPredicted RBP6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 CD300CQ08708 224 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 PPP1R1AQ13522 171 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 PMS2P11Q13670 270 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 SMCO1Q147U7 214 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 KCTD9Q7L273 389 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 DEFB125Q8N687 156 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 INO80EQ8NBZ0 244 aaPredicted RBP6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 MRPL30Q8TCC3 161 aaKnown RBP6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 MOB3AQ96BX8 217 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 YPEL2Q96QA6 119 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 PARP12Q9H0J9 701 aaKnown RBP6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 SRD5A3Q9H8P0 318 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 SIGLEC8Q9NYZ4 499 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 METTL1Q9UBP6 276 aaKnown RBP6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 HSPB11Q9Y547 144 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 VPS13DQ5THJ4 4388 aa6.17□□□□□ -1.42
CCDC88C-214ENST00000557507 A0A0D9SG52 128 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 OR5H14A6NHG9 310 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 FAM25EA8MYX2 175 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 L7N2F9 121 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 RGS13O14921 159 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 RBMXL2O75526 392 aaKnown RBP6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 DEDDO75618 318 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 ATG12O94817 140 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 IFNA7P01567 189 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 CXCL3P19876 107 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 RAB14P61106 215 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 HLA-DRB3P79483 266 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 HTD2P86397 168 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 EWSR1Q01844 656 aaKnown RBP eCLIP6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 PSG5Q15238 335 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 CD300EQ496F6 205 aaPredicted RBP6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 FAM71F2Q6NXP2 309 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF562Q6V9R5 426 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 LGI3Q8N145 548 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 OR5T1Q8NG75 326 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 SPIN2AQ99865 258 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 SPIN2BQ9BPZ2 258 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 NMES1Q9C002 83 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 C5orf66Q9H5L9 145 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF355PQ9NSJ1 428 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 WASHC3Q9Y3C0 194 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 RBM7Q9Y580 266 aaKnown RBP6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 ABCA13Q86UQ4 5058 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 PKHD1P08F94 4074 aa6.16□□□□□ -1.42
CCDC88C-214ENST00000557507 DUXBA0A1W2PPF3 345 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 CXorf65A6NEN9 183 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF785A8K8V0 405 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 H3BUA1 57 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms