RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	UMOD	P07911	640 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	SMIM13	P0DJ93	91 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005		Q5PR19	223 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	INO80C	Q6PI98	192 aa	Predicted RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	UNQ5815/PRO19632	Q6UWF5	114 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	C12orf54	Q6X4T0	127 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	ITLN1	Q8WWA0	313 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	FAM157A	C9JC47	383 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005		M0R296	226 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	DNPH1	O43598	174 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	CD24	P25063	80 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	LGALS4	P56470	323 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	RPL30	P62888	115 aa	Known RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PRB3	Q04118	309 aa	Predicted RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	AMMECR1L	Q6DCA0	310 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	OR1L8	Q8NGR8	309 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	SNRNP40	Q96DI7	357 aa	Known RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF714	Q96N38	554 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	MRPL32	Q9BYC8	188 aa	Known RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	RPP21	Q9H633	154 aa	Known RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005		F2Z2F3	143 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	CIDEA	O60543	219 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	HYPM	O75409	117 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	HLA-DRB1	P01911	266 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PYY	P10082	97 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PSG1	P11464	419 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PSMB2	P49721	201 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	RND2	P52198	227 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	RPL8	P62917	257 aa	Known RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005		Q6ZWC4	215 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	GCSAM	Q8N6F7	178 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	MYOZ3	Q8TDC0	251 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	LOXL4	Q96JB6	756 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMUB1	Q9BVT8	246 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PRDM13	Q9H4Q3	707 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	THYN1	Q9P016	225 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PEF1	Q9UBV8	284 aa	Known RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	JPT1	Q9UK76	154 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	SELENOK	Q9Y6D0	94 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRAV9-1	A0A075B6T8	112 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	SAA2-SAA4	A0A096LPE2	208 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRAV1-1	A0A0B4J248	108 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005		H3BUT2	72 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005		M0QZ24	198 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	NUDT3	O95989	172 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	SAA2	P0DJI9	122 aa	Predicted RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	FXYD7	P58549	80 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	CFHR1	Q03591	330 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	MAJIN	Q3KP22	176 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNRF1	Q8ND25	227 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	FMC1	Q96HJ9	113 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005		S4R3C0	116 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PCM1	Q15154	2024 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	PRR19	A6NJB7	356 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	HIGD1C	A8MV81	97 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	GNG7	O60262	68 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	GPR183	P32249	361 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	PRRX1	P54821	245 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	HOXA4	Q00056	320 aa	Predicted RBP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	PRSS8	Q16651	343 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	LINC01551	Q86U37	167 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	BEND2	Q8NDZ0	799 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	RNASEH2C	Q8TDP1	164 aa	Known RBP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	NAA38	Q9BRA0	125 aa	Known RBP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	MCRIP2	Q9BUT9	160 aa	Known RBP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	FBXL7	Q9UJT9	491 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005		H7C2G1	150 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	HSPE1	P61604	102 aa	Known RBP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	EFNB3	Q15768	340 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	SAMD13	Q5VXD3	122 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	GOLT1A	Q6ZVE7	132 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	TXNDC17	Q9BRA2	123 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	AP5S1	Q9NUS5	200 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRAV9-2	A0A087WT02	112 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005		A0A1W2PS18	150 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005		K7ERU9	68 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	PAX9	P55771	341 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	LCN12	Q6JVE5	192 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	SAP25	Q8TEE9	199 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	C18orf15	Q96N68	181 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	REPIN1	Q9BWE0	567 aa	Known RBP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	CFHR5	Q9BXR6	569 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	IGLV3-32	A0A0A0MS00	114 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	SMIM17	P0DL12	118 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	CKS2	P33552	79 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	LDLRAD2	Q5SZI1	272 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	TREML4	Q6UXN2	200 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005		Q6ZRM9	215 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	HIST1H4G	Q99525	98 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	MEGF9	Q9H1U4	602 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	TNFRSF19	Q9NS68	423 aa		4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005	NUP214	P35658	2090 aa	Predicted RBP	4.16	□□□□□ -1.74
SYNE2-223	ENST00000557005		A1L4Q6	167 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	TGFA	P01135	160 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	LINC00614	P0C842	121 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	RPL7	P18124	248 aa	Known RBP	4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	PLA2G5	P39877	138 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	KIR2DL2	P43627	348 aa	Predicted RBP	4.15	□□□□□ -1.74

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