RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 C19orf24Q9BVV8 132 aa11.06□□□□□ -0.64
SHMT2-222ENST00000555774 SEPSECSQ9HD40 501 aaKnown RBP11.06□□□□□ -0.64
SHMT2-222ENST00000555774 BET1LQ9NYM9 111 aa11.06□□□□□ -0.64
SHMT2-222ENST00000555774 SLC45A2Q9UMX9 530 aa11.06□□□□□ -0.64
SHMT2-222ENST00000555774 C2orf83Q53S99 150 aa11.05□□□□□ -0.64
SHMT2-222ENST00000555774 GBGT1Q8N5D6 347 aa11.05□□□□□ -0.64
SHMT2-222ENST00000555774 LINC00469Q8N7U9 141 aa11.05□□□□□ -0.64
SHMT2-222ENST00000555774 OR5B3Q8NH48 314 aa11.05□□□□□ -0.64
SHMT2-222ENST00000555774 C14orf144Q96I85 54 aa11.05□□□□□ -0.64
SHMT2-222ENST00000555774 SLC35D1Q9NTN3 355 aa11.05□□□□□ -0.64
SHMT2-222ENST00000555774 LINC00312Q9Y6C7 94 aa11.05□□□□□ -0.64
SHMT2-222ENST00000555774 NKX6-3A6NJ46 265 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 LINC00869P0C866 280 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 CT45A6P0DMU7 189 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 CT45A5P0DMU8 189 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 CT45A7P0DMV0 189 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 IGFBP2P18065 325 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 SPATA31B1PQ5VZV4 182 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 OR1L8Q8NGR8 309 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 OCC1Q8TAD7 63 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 CCL13Q99616 98 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 IL36BQ9NZH7 164 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 A8MXE2 369 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 CD40P25942 277 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 GNG10P50151 68 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 RPL31P62899 125 aaKnown RBP11.04□□□□□ -0.64
SHMT2-222ENST00000555774 MEF2CQ06413 473 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-222ENST00000555774 DUX4L9Q6RFH8 374 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-222ENST00000555774 OR4P4Q8NGL7 312 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 GAL3ST2Q9H3Q3 398 aa11.04□□□□□ -0.64
SHMT2-222ENST00000555774 PGPEP1LA6NFU8 196 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 KRTCAP3Q53RY4 240 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 ZNF833PQ6ZTB9 187 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 RPRMLQ8N4K4 120 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 FAM216BQ8N7L0 139 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 OSR1Q8TAX0 266 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-222ENST00000555774 FAM57AQ8TBR7 257 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 AURKAIP1Q9NWT8 199 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-222ENST00000555774 TECRQ9NZ01 308 aaKnown RBP11.03□□□□□ -0.64
SHMT2-222ENST00000555774 A0A087X0M5 115 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 A0A1B0GX30 115 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 INS-IGF2F8WCM5 200 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 TNFRSF1AP19438 455 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 IQCJQ1A5X6 159 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 NABP2Q9BQ15 211 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 HINT2Q9BX68 163 aa11.03□□□□□ -0.64
SHMT2-222ENST00000555774 TEX50A0A1B0GTY4 177 aa11.02□□□□□ -0.64
SHMT2-222ENST00000555774 TAS2R45P59539 299 aa11.02□□□□□ -0.64
SHMT2-222ENST00000555774 PQLC2Q6ZP29 291 aa11.02□□□□□ -0.64
SHMT2-222ENST00000555774 MRPL41Q8IXM3 137 aaKnown RBP11.02□□□□□ -0.64
SHMT2-222ENST00000555774 DEFB108BQ8NET1 73 aa11.02□□□□□ -0.64
SHMT2-222ENST00000555774 EAF1Q96JC9 268 aaPredicted RBP11.02□□□□□ -0.64
SHMT2-222ENST00000555774 DOCK11Q5JSL3 2073 aa11.02□□□□□ -0.64
SHMT2-222ENST00000555774 CACNA1DQ01668 2161 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 HCFC1P51610 2035 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 APOA2P02652 100 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 SELENOTP62341 195 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 ZNF90Q03938 601 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 MIR17HGQ75NE6 70 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 RNF2Q99496 336 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 PRO1933Q9H354 126 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 COL6A3P12111 3177 aa11.02□□□□□ -0.65
SHMT2-222ENST00000555774 DIDO1Q9BTC0 2240 aaKnown RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 FOXH1O75593 365 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 OR5G3P0C626 314 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 OR10J4P0C629 311 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 LBHQ53QV2 105 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 FAM71F2Q6NXP2 309 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 TMEM108Q6UXF1 575 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 CACNG8Q8WXS5 425 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 LRFN3Q9BTN0 628 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 INTS1Q8N201 2190 aaKnown RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 TRBV9A0A0B4J1U6 114 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 SRRM4A7MD48 611 aaKnown RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 K7EN84 100 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 MMP23AO75900 390 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 SAA1P0DJI8 122 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 RNASE2P10153 161 aaKnown RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 MYOD1P15172 320 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 RPL19P84098 196 aaKnown RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 FAM27E3Q08E93 113 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 PSG5Q15238 335 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 SSX8Q7RTT4 187 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 RBMXL3Q8N7X1 1067 aaKnown RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 OR4A5Q8NH83 315 aa11.01□□□□□ -0.65
SHMT2-222ENST00000555774 MRPL32Q9BYC8 188 aaKnown RBP11.01□□□□□ -0.65
SHMT2-222ENST00000555774 IGKV1-16P04430 117 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 CD69Q07108 199 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 TMEM177Q53S58 311 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 TET2Q6N021 2002 aaPredicted RBP11□□□□□ -0.65
SHMT2-222ENST00000555774 BEND2Q8NDZ0 799 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 MUC3AQ02505 3323 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 A8MWP6 167 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 DLL1O00548 723 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 NDUFB7P17568 137 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 OR10J1P30954 320 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 ADMP35318 185 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 LGALS4P56470 323 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 RPEL1Q2QD12 228 aa11□□□□□ -0.65
SHMT2-222ENST00000555774 ZNF664Q8N3J9 261 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms