RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CXorf1O96002 111 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 CA2P00918 260 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 PAX1P15863 534 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 GCHFRP30047 84 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 TIMP3P35625 211 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 PAX5Q02548 391 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 MLANAQ16655 118 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 TRAT1Q6PIZ9 186 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 MIR17HGQ75NE6 70 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 GBGT1Q8N5D6 347 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 OR4P4Q8NGL7 312 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 NPVFQ9HCQ7 196 aa6.16□□□□□ -1.42
LIMA1-213ENST00000552720 A0A1B0GWJ7 208 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 MPDU1O75352 247 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 CGB3P0DN86 165 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 CGB7P0DN87 165 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 CBLN1P23435 193 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 NPY1RP25929 384 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 TMPRSS3P57727 454 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 LCN2P80188 198 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 OR5I1Q13606 314 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 CR1LQ2VPA4 569 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 DEFB109BQ30KR1 87 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 ASPHD1Q5U4P2 390 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 TEX38Q6PEX7 206 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 ZNF474Q6S9Z5 364 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-213ENST00000552720 DEFB124Q8NES8 71 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 SLC24A4Q8NFF2 622 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 OR52E5Q8NH55 327 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 FAM216AQ8WUB2 273 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 TMEM18Q96B42 140 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 LOXL4Q96JB6 756 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 IDI2-AS1Q9NZ38 188 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 SPTBN2O15020 2390 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 RELNP78509 3460 aa6.15□□□□□ -1.42
LIMA1-213ENST00000552720 RIF1Q5UIP0 2472 aaKnown RBP6.15□□□□□ -1.43
LIMA1-213ENST00000552720 IGKV1OR2-108A0A075B7D4 117 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 TRAV17A0A0B4J275 112 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 TMEM238LA0A1B0GVL6 79 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 FAM90A9PA6NNJ1 464 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 F2Z2F3 143 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 MKRN2OSH3BPM6 223 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 LHBP01229 141 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 IGKV1-16P04430 117 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 RPP30P78346 268 aaKnown RBP6.15□□□□□ -1.43
LIMA1-213ENST00000552720 FOXL1Q12952 345 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 TMEM249Q2WGJ8 235 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 TEPPQ6URK8 271 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 FAM216BQ8N7L0 139 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 OR4S2Q8NH73 311 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 ASCL3Q9NQ33 180 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 TP53TG3Q9ULZ0 132 aa6.15□□□□□ -1.43
LIMA1-213ENST00000552720 SRRM4A7MD48 611 aaKnown RBP6.14□□□□□ -1.43
LIMA1-213ENST00000552720 SPINK4O60575 86 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 SCGB1D1O95968 90 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 GCGP01275 180 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 CD99P14209 185 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 KLF3P57682 345 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-213ENST00000552720 MRPS11P82912 194 aaKnown RBP6.14□□□□□ -1.43
LIMA1-213ENST00000552720 IGFL2Q6UWQ7 119 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 OR10G8Q8NGN5 311 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 ZCCHC14Q8WYQ9 949 aaKnown RBP6.14□□□□□ -1.43
LIMA1-213ENST00000552720 RND1Q92730 232 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 CCL13Q99616 98 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 LRFN3Q9BTN0 628 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 TMEM14BQ9NUH8 114 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 TRGV8A0A0C4DH27 118 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 KBTBD11-OT1A0A1B0GTJ5 212 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 EREGO14944 169 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 LINC00869P0C866 280 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 LINC00310P59036 64 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 HSPE1P61604 102 aaKnown RBP6.14□□□□□ -1.43
LIMA1-213ENST00000552720 KRTCAP3Q53RY4 240 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 PPP1R35Q8TAP8 253 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 OR51B2Q9Y5P1 312 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 POLEQ07864 2286 aa6.14□□□□□ -1.43
LIMA1-213ENST00000552720 ASH1LQ9NR48 2969 aaKnown RBP6.13□□□□□ -1.43
LIMA1-213ENST00000552720 ACACAQ13085 2346 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 OR10J4P0C629 311 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 FTH1P19P0C7X4 201 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 RHOBP62745 196 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 PRR20EP86478 221 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 PRR20CP86479 221 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 PRR20DP86480 221 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 PRR20BP86481 221 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 PRR20AP86496 221 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF90Q03938 601 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 PSG5Q15238 335 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 USF2Q15853 346 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-213ENST00000552720 ZCCHC24Q8N2G6 241 aaKnown RBP6.13□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF439Q8NDP4 499 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 OR10W1Q8NGF6 305 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF503Q96F45 646 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 GCM1Q9NP62 436 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 TUBG2Q9NRH3 451 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 FKBP11Q9NYL4 201 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 FOXA2Q9Y261 457 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-213ENST00000552720 FAM215AQ9Y5M1 114 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 ZFHX2Q9C0A1 2572 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-213ENST00000552720 ABCA1O95477 2261 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms