RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, human

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-208	ENST00000551691		Q6ZR54	194 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	BOD1L2	Q8IYS8	172 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	LGI3	Q8N145	548 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	C11orf42	Q8N5U0	333 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	UBL4B	Q8N7F7	174 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	CCNYL1	Q8N7R7	359 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	C11orf72	Q8NBR9	251 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	OR4K5	Q8NGD3	323 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	OR51D1	Q8NGF3	324 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	OR4X2	Q8NGF9	303 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	OR6N1	Q8NGY5	312 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	COQ8A	Q8NI60	647 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	PTX4	Q96A99	478 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	SLC35E1	Q96K37	410 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	OR7D2	Q96RA2	312 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	CCL13	Q99616	98 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	C20orf144	Q9BQM9	153 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	TMEM243	Q9BU79	118 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	TAPBPL	Q9BX59	468 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	SLC19A3	Q9BZV2	496 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	HMG20A	Q9NP66	347 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	DIABLO	Q9NR28	239 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	TAS2R7	Q9NYW3	318 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	POLR3H	Q9Y535	204 aa	Predicted RBP	2.57	□□□□□ -2
LIMA1-208	ENST00000551691	TIMM22	Q9Y584	194 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	AGRN	O00468	2067 aa		2.57	□□□□□ -2
LIMA1-208	ENST00000551691	LRP1	Q07954	4544 aa	Known RBP	2.56	□□□□□ -2
LIMA1-208	ENST00000551691	TMEM213	A2RRL7	107 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	FTCDNL1	E5RQL4	147 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	LINC01619	G3V211	115 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691		H0Y9J4	135 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	SGCE	O43556	437 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	SPAG7	O75391	227 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	VAMP5	O95183	116 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	IGLV2-23	P01705	113 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	SNRPA	P09012	282 aa	Known RBP	2.56	□□□□□ -2
LIMA1-208	ENST00000551691	TFPT	P0C1Z6	253 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	CXCR1	P25024	350 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	FKBP2	P26885	142 aa	Known RBP	2.56	□□□□□ -2
LIMA1-208	ENST00000551691	PITPNA	Q00169	270 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	OR8B8	Q15620	311 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	ZNF79	Q15937	498 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	ABCA11P	Q4W5N1	156 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	CLEC12A	Q5QGZ9	265 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	C1orf140	Q5VVS0	124 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	OR2T2	Q6IF00	324 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	EPGN	Q6UW88	154 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	C4orf22	Q6V702	233 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	ZNF826P	Q6ZT77	177 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	PCP2	Q8IVA1	136 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	MKX	Q8IYA7	352 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	ENKUR	Q8TC29	256 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	TEX37	Q96LM6	180 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	C18orf15	Q96N68	181 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	METTL26	Q96S19	204 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	STAC	Q99469	402 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	PITX2	Q99697	317 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	MRPL20	Q9BYC9	149 aa	Known RBP	2.56	□□□□□ -2
LIMA1-208	ENST00000551691	POPDC3	Q9HBV1	291 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	TMEM38B	Q9NVV0	291 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	CYB5R1	Q9UHQ9	305 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	PCTP	Q9UKL6	214 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	ZNF257	Q9Y2Q1	563 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	PUS1	Q9Y606	427 aa	Known RBP eCLIP	2.56	□□□□□ -2
LIMA1-208	ENST00000551691	LRP2	P98164	4655 aa		2.56	□□□□□ -2
LIMA1-208	ENST00000551691	IGLV1-50	A0A075B6I6	118 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	TRBV6-6	A0A0A6YYG2	114 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	FABP12	A6NFH5	140 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	LRRN3	E7EW58	273 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691		M0R1X1	148 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	DNASE2	O00115	360 aa	Predicted RBP	2.55	□□□□□ -2
LIMA1-208	ENST00000551691	ITGB1BP1	O14713	200 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	TAAR5	O14804	337 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	PSPHP1	O15172	72 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	NDUFS5	O43920	106 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	ENTPD6	O75354	484 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	KLHL2	O95198	593 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	ATP6V1G2	O95670	118 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	PRB4	P10163	310 aa	Predicted RBP	2.55	□□□□□ -2
LIMA1-208	ENST00000551691	ZNF32	P17041	273 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	HLA-G	P17693	338 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	PSMB6	P28072	239 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	GRPR	P30550	384 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	PRSS3	P35030	304 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	GDI2	P50395	445 aa	Known RBP	2.55	□□□□□ -2
LIMA1-208	ENST00000551691	CCR6	P51684	374 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	SLC18A1	P54219	525 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	DSCR10	P59022	87 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	HOXC5	Q00444	222 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	PSG4	Q00888	419 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	TNFRSF9	Q07011	255 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	C6orf99	Q4VX62	202 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	MPV17L2	Q567V2	206 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	CLEC19A	Q6UXS0	136 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	IL34	Q6ZMJ4	242 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	FUNDC1	Q8IVP5	155 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	ZNF695	Q8IW36	515 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	FAM216B	Q8N7L0	139 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	SLC26A10	Q8NG04	563 aa		2.55	□□□□□ -2
LIMA1-208	ENST00000551691	H1FX	Q92522	213 aa	Known RBP	2.55	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms