RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 H7C1H1 209 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 MGST1P10620 155 aaKnown RBP7.42□□□□□ -1.22
VPS13D-212ENST00000543766 ZNF708P17019 499 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 PPP1CCP36873 323 aaKnown RBP7.42□□□□□ -1.22
VPS13D-212ENST00000543766 PFN3P60673 137 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 KIR3DS1Q14943 382 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 PMCHL1Q16048 86 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 GAGE13Q4V321 117 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 LYSMD4Q5XG99 296 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 STAC2Q6ZMT1 411 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 MOB3BQ86TA1 216 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 MEX3DQ86XN8 651 aaKnown RBP7.42□□□□□ -1.22
VPS13D-212ENST00000543766 OR10G8Q8NGN5 311 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 BPIFA1Q9NP55 256 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 TRAV9-2A0A087WT02 112 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 TRAV8-1A0A0A6YYK1 113 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 M0QZQ0 153 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 SLC2A10O95528 541 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 IRF1P10914 325 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 NXPH1P58417 271 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 ZCCHC24Q8N2G6 241 aaKnown RBP7.42□□□□□ -1.22
VPS13D-212ENST00000543766 OR4X2Q8NGF9 303 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 CLDN23Q96B33 292 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 RNF126Q9BV68 326 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 PRTFDC1Q9NRG1 225 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 VSIG4Q9Y279 399 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 KIAA1549Q9HCM3 1950 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 SOCS1O15524 211 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 C8orf88P0DMB2 117 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 WASP42768 502 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 PPICP45877 212 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 SLC25A1P53007 311 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 ADAT3Q96EY9 351 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-212ENST00000543766 CHCHD5Q9BSY4 110 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 GOLGA2P5Q9HBQ8 144 aa7.42□□□□□ -1.22
VPS13D-212ENST00000543766 TRIP12Q14669 1992 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-212ENST00000543766 ZNF736B4DX44 427 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 CDX4O14627 284 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 TIAF1O95411 115 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 IL9P15248 144 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 IGLL1P15814 213 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 FXYD6P3P58550 94 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 SSBP1Q04837 148 aaKnown RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 RNF128Q8TEB7 428 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 ZNF256Q9Y2P7 627 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 MED31Q9Y3C7 131 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 MDC1Q14676 2089 aaKnown RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 COL4A3Q01955 1670 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 ZFP92A6NM28 416 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 LILRA1O75019 489 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 SPTBP11277 2137 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 PFN2P35080 140 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 C1orf61Q13536 156 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 RNF138Q8WVD3 245 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 RNF166Q96A37 237 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 FAM90A10PA6NDY2 464 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 E9PLN8 166 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 H3BMG7 143 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 ARL6IP5O75915 188 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 SLC25A14O95258 325 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 SLC25A5P05141 298 aaKnown RBP7.41□□□□□ -1.22
VPS13D-212ENST00000543766 GPX1P07203 203 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 PTGDSP41222 190 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 PMAIP1Q13794 54 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 ZNF542PQ5EBM4 170 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 KIR3DL3Q8N743 410 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 SYNPRQ8TBG9 265 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 IMMP2LQ96T52 175 aa7.41□□□□□ -1.22
VPS13D-212ENST00000543766 A0A1W2PRD5 423 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 HMGN4O00479 90 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 CCL21O00585 134 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 CXCL13O43927 109 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 ZGLP1P0C6A0 271 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 NTF4P34130 210 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 CDK5R1Q15078 307 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 CR1LQ2VPA4 569 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 CEACAM16Q2WEN9 425 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 SERTAD4-AS1Q5TG53 156 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 LCN10Q6JVE6 187 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 FAM19A2Q8N3H0 131 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 LRTM2Q8N967 370 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 KLHDC9Q8NEP7 349 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 TMEM150CB9EJG8 249 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 TIMP1P01033 207 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 AMY2AP04746 511 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 AMY2BP19961 511 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 VDAC1P21796 283 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 LEPP41159 167 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 SEC11AP67812 179 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 PMVKQ15126 192 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 CLDN19Q8N6F1 224 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 BANF2Q9H503 90 aa7.4□□□□□ -1.22
VPS13D-212ENST00000543766 ZC3H12DA2A288 527 aaKnown RBP7.4□□□□□ -1.23
VPS13D-212ENST00000543766 LMX1BO60663 402 aa7.4□□□□□ -1.23
VPS13D-212ENST00000543766 NDUFA7O95182 113 aa7.4□□□□□ -1.23
VPS13D-212ENST00000543766 ZNF43P17038 809 aa7.4□□□□□ -1.23
VPS13D-212ENST00000543766 CTRLP40313 264 aa7.4□□□□□ -1.23
VPS13D-212ENST00000543766 HBG1P69891 147 aa7.4□□□□□ -1.23
VPS13D-212ENST00000543766 ELOCQ15369 112 aa7.4□□□□□ -1.23
VPS13D-212ENST00000543766 CD226Q15762 336 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms