RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 POU2AF1Q16633 256 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 ZNF773Q6PK81 442 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 SPAG16Q8N0X2 631 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 OR11H2Q8NH07 326 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 SRSF8Q9BRL6 282 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 CCL28Q9NRJ3 127 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 ANXA10Q9UJ72 324 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 TMEM235A6NFC5 223 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 K7EMT4 169 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 DEFB4AO15263 64 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 TCTAP57738 103 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 GDPD1Q8N9F7 314 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 RNF2Q99496 336 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 C20orf24Q9BUV8 137 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 COMMD5Q9GZQ3 224 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 ETV7Q9Y603 341 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 PKD1P98161 4303 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 AGRNO00468 2067 aa13.03□□□□□ -0.32
CLSTN3-214ENST00000542663 IGHV3-21A0A0B4J1V1 117 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 A0A1B0GVY2 172 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 RBFOX2O43251 390 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 RGS10O43665 173 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 SERPINE2P07093 398 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 RAB3BP20337 219 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 TAS2R31P59538 309 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 WT1-ASQ06250 92 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 SPSB3Q6PJ21 355 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 SECTM1Q8WVN6 248 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 AIFM2Q9BRQ8 373 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 QTRT1Q9BXR0 403 aaKnown RBP13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 C6orf62Q9GZU0 229 aaPredicted RBP13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 TPRKBQ9Y3C4 175 aa13.02□□□□□ -0.33
CLSTN3-214ENST00000542663 SULT1C2O00338 296 aa13.01□□□□□ -0.33
CLSTN3-214ENST00000542663 PTHLHP12272 177 aa13.01□□□□□ -0.33
CLSTN3-214ENST00000542663 MSMO1Q15800 293 aa13.01□□□□□ -0.33
CLSTN3-214ENST00000542663 SCARB1Q8WTV0 552 aa13.01□□□□□ -0.33
CLSTN3-214ENST00000542663 TMEM140Q9NV12 185 aa13.01□□□□□ -0.33
CLSTN3-214ENST00000542663 SMPXQ9UHP9 88 aa13.01□□□□□ -0.33
CLSTN3-214ENST00000542663 SMIM30A4D0T7 59 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 C15orf62A8K5M9 175 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 IGLL5B9A064 214 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 ANKRD65E5RJM6 399 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 CHEK1O14757 476 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 HPRT1P00492 218 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 FGF2P09038 288 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 OR13C7P0DN81 318 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 NQO2P16083 231 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 SLC25A24Q6NUK1 477 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 GVQW1Q8N7I0 195 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 OR13F1Q8NGS4 319 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 ATP6V0BQ99437 205 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 CCDC90BQ9GZT6 254 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 C21orf62Q9NYP8 219 aa13□□□□□ -0.33
CLSTN3-214ENST00000542663 IGHV7-4-1A0A0J9YVY3 117 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 TEX50A0A1B0GTY4 177 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 K7EIM0 57 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 CTSGP08311 255 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 TRAPPC2P0DI81 140 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 TRAPPC2BP0DI82 140 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 MYL9P24844 172 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 TFPI2P48307 235 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 GNG2P59768 71 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 PRSS48Q7RTY5 328 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 RHPN1-AS1Q9BWJ2 59 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 F11RQ9Y624 299 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 ABCA13Q86UQ4 5058 aa12.99□□□□□ -0.33
CLSTN3-214ENST00000542663 PPYP01298 95 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 FCGR2CP31995 323 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 FAM90A2PQ658T7 463 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 THOC7Q6I9Y2 204 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 UBAC2Q8NBM4 344 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 ZBTB34Q8NCN2 500 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 DMBX1Q8NFW5 382 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 NDUFA4L2Q9NRX3 87 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 NDUFB11Q9NX14 153 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 DNAH11Q96DT5 4516 aa12.98□□□□□ -0.33
CLSTN3-214ENST00000542663 IGKV3-7A0A075B6H7 116 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 IGHV3-49A0A0A0MS15 119 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 TRDV1A0A1B0GX56 115 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 CYB5BO43169 146 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 CA1P00915 261 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 CATR1Q13166 79 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 ZNF818PQ6ZRF7 136 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 LINC00336Q6ZUF6 198 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 HSD17B13Q7Z5P4 300 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 Q8NAQ8 132 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 TMEM116Q8NCL8 245 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 OR10C1Q96KK4 312 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 VCXQ9H320 206 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 PLEKHA2Q9HB19 425 aa12.97□□□□□ -0.33
CLSTN3-214ENST00000542663 XRCC3O43542 346 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 MED14OSP0DP75 135 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 CMC4P56277 68 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 TMEM187Q14656 261 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 Q56UQ5 140 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 C22orf42Q6IC83 251 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 GBGT1Q8N5D6 347 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 BEST4Q8NFU0 473 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 OR51H1Q8NH63 302 aa12.96□□□□□ -0.33
CLSTN3-214ENST00000542663 SLC5A7Q9GZV3 580 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms