RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CFHR3Q02985 330 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 SMCO1Q147U7 214 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 AARDQ4LEZ3 155 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 ASPHD1Q5U4P2 390 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 Q6ZNX1 250 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 ZNF329Q86UD4 541 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 UXS1Q8NBZ7 420 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 OR5AU1Q8NGC0 362 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 SRSF8Q9BRL6 282 aaKnown RBP13.44□□□□□ -0.26
LIG1-204ENST00000542460 PDCD10Q9BUL8 212 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 CGB1A6NKQ9 187 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 ST8SIA3O43173 380 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 APELAP0DMC3 54 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 TATDN3Q17R31 274 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 TEX38Q6PEX7 206 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 C12orf54Q6X4T0 127 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 COMMD1Q8N668 190 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 OR52E5Q8NH55 327 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 WFDC12Q8WWY7 111 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 HINT2Q9BX68 163 aa13.43□□□□□ -0.26
LIG1-204ENST00000542460 A0A1W2PN81 502 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 HMX3A6NHT5 357 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 PLXNB1O43157 2135 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 IFNA17P01571 189 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 IGHG4P01861 327 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 CHRNA7P36544 502 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 C10orf99Q6UWK7 81 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 HSD17B13Q7Z5P4 300 aaPredicted RBP13.42□□□□□ -0.26
LIG1-204ENST00000542460 OR5M8Q8NGP6 311 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 FBN3Q75N90 2809 aa13.42□□□□□ -0.26
LIG1-204ENST00000542460 TNCP24821 2201 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 ANK2Q01484 3957 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 C7orf66A4D0T2 115 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 IGLV1-40P01703 118 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 PRCDQ00LT1 54 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 TTC9CQ8N5M4 171 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 OR5T1Q8NG75 326 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 OR10W1Q8NGF6 305 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 OR4X2Q8NGF9 303 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 OR1S1Q8NH92 325 aa13.41□□□□□ -0.26
LIG1-204ENST00000542460 IGLC7A0M8Q6 106 aa13.4□□□□□ -0.26
LIG1-204ENST00000542460 SOX15O60248 233 aa13.4□□□□□ -0.26
LIG1-204ENST00000542460 PITX3O75364 302 aa13.4□□□□□ -0.26
LIG1-204ENST00000542460 ELANEP08246 267 aa13.4□□□□□ -0.26
LIG1-204ENST00000542460 SPCS3P61009 180 aa13.4□□□□□ -0.26
LIG1-204ENST00000542460 FOXE3Q13461 319 aa13.4□□□□□ -0.26
LIG1-204ENST00000542460 PDLIM3Q53GG5 364 aaPredicted RBP13.4□□□□□ -0.26
LIG1-204ENST00000542460 MRPL41Q8IXM3 137 aaKnown RBP13.4□□□□□ -0.26
LIG1-204ENST00000542460 C3orf56Q8N813 242 aa13.4□□□□□ -0.26
LIG1-204ENST00000542460 FAM110DQ8TAY7 271 aaPredicted RBP13.4□□□□□ -0.26
LIG1-204ENST00000542460 NPIPB5A8MRT5 1133 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 MPTX1A8MV57 137 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 PFDN1O60925 122 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 AREGP15514 252 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 PSMB6P28072 239 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 KRTAP10-3P60369 221 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 WT1-ASQ06250 92 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 ZNF747Q9BV97 191 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 PLEKHA3Q9HB20 300 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 HSPB7Q9UBY9 170 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 ALG5Q9Y673 324 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 H3BUA1 57 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 SSNA1O43805 119 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 FBXO24O75426 580 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 BRI3O95415 125 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 CRYGCP07315 174 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 OR13C7P0DN81 318 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 CD28P10747 220 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 PSMB8P28062 276 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 IAH1Q2TAA2 248 aaPredicted RBP13.39□□□□□ -0.27
LIG1-204ENST00000542460 CXorf66Q5JRM2 361 aaPredicted RBP13.39□□□□□ -0.27
LIG1-204ENST00000542460 TMEM65Q6PI78 240 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 OR10C1Q96KK4 312 aa13.39□□□□□ -0.27
LIG1-204ENST00000542460 C13orf42A0A1B0GVH6 325 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 FAM90A26D6RGX4 464 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 INS-IGF2F8WCM5 200 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 CCSO14618 274 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 REG1AP05451 166 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 PF4V1P10720 104 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 CTRB1P17538 263 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 ERHP84090 104 aaKnown RBP13.38□□□□□ -0.27
LIG1-204ENST00000542460 TNFRSF9Q07011 255 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 SPINK9Q5DT21 86 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 TCTEX1D4Q5JR98 221 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 CTRB2Q6GPI1 263 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 RNF152Q8N8N0 203 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 C11orf44Q8N8P7 122 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 SLA2Q9H6Q3 261 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 ENY2Q9NPA8 101 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 ZNF355PQ9NSJ1 428 aa13.38□□□□□ -0.27
LIG1-204ENST00000542460 C5orf51A6NDU8 294 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 CEBPZOSA8MTT3 80 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 FAM25EA8MYX2 175 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 NXPH3O95157 252 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 HOXA1P49639 335 aaPredicted RBP13.37□□□□□ -0.27
LIG1-204ENST00000542460 RAB9AP51151 201 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 CD83Q01151 205 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 SRSF4Q08170 494 aaKnown RBP13.37□□□□□ -0.27
LIG1-204ENST00000542460 GSG1LQ6UXU4 331 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 CITED1Q99966 193 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms