RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MDKP21741 143 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-216ENST00000541410 PRCDQ00LT1 54 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 TMEM177Q53S58 311 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 GATAD1Q8WUU5 269 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 NEU4Q8WWR8 484 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-216ENST00000541410 CLEC7AQ9BXN2 247 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 COMMD5Q9GZQ3 224 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 WDR83OSQ9Y284 106 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 MAP1AP78559 2803 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-216ENST00000541410 BTBD17A6NE02 478 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 IGLV1-47P01700 117 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 RPL8P62917 257 aaKnown RBP11.74□□□□□ -0.53
CLIP1-216ENST00000541410 AWAT1Q58HT5 328 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 SOHLH1Q5JUK2 328 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 LDLRAD2Q5SZI1 272 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 MIC13Q5XKP0 118 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 C1orf159Q96HA4 380 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 MGST2Q99735 147 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 CHODLQ9H9P2 273 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 RPS10P5Q9NQ39 176 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 TIMM9Q9Y5J7 89 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 BUB1B-PAK6H3BSN5 160 aa11.73□□□□□ -0.53
CLIP1-216ENST00000541410 IGHV3-48P01763 117 aa11.73□□□□□ -0.53
CLIP1-216ENST00000541410 SRP19P09132 144 aaKnown RBP11.73□□□□□ -0.53
CLIP1-216ENST00000541410 CENPVQ7Z7K6 275 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-216ENST00000541410 PDPNQ86YL7 162 aa11.73□□□□□ -0.53
CLIP1-216ENST00000541410 MBD3L1Q8WWY6 194 aa11.73□□□□□ -0.53
CLIP1-216ENST00000541410 SSBP3Q9BWW4 388 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-216ENST00000541410 ZNF430Q9H8G1 570 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-216ENST00000541410 REG1AP05451 166 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 LIPFP07098 398 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 RNF224P0DH78 156 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 PRRX1P54821 245 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 C8orf31Q8N9H6 132 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 OR4P4Q8NGL7 312 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 RAB24Q969Q5 203 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 INSIG2Q9Y5U4 225 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 CELSR1Q9NYQ6 3014 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 MYO18BQ8IUG5 2567 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 TMEM8BA6NDV4 472 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 CD24P25063 80 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 ZNF137PP52743 207 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 ZNF506Q5JVG8 444 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 ZNF257Q9Y2Q1 563 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 HILPDAQ9Y5L2 63 aa11.72□□□□□ -0.53
CLIP1-216ENST00000541410 ZFHX3Q15911 3703 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 TRAV1-1A0A0B4J248 108 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 IGHV1-3A0A0C4DH29 117 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 LOC102723971A0A1B0GUV8 181 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 A0A1B0GW64 132 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 CGB1A6NKQ9 187 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 C17orf112F2Z3M2 114 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 IL3RAP26951 378 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 GPR6P46095 362 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-216ENST00000541410 RPEQ96AT9 228 aa11.71□□□□□ -0.53
CLIP1-216ENST00000541410 LOC105371242A0A075B767 164 aa11.71□□□□□ -0.54
CLIP1-216ENST00000541410 A0A1W2PPH5 198 aa11.71□□□□□ -0.54
CLIP1-216ENST00000541410 BCL2P10415 239 aa11.71□□□□□ -0.54
CLIP1-216ENST00000541410 C19orf35Q6ZS72 473 aa11.71□□□□□ -0.54
CLIP1-216ENST00000541410 GGTLC1Q9BX51 225 aa11.71□□□□□ -0.54
CLIP1-216ENST00000541410 NDUFA4L2Q9NRX3 87 aa11.71□□□□□ -0.54
CLIP1-216ENST00000541410 CSMD2Q7Z408 3487 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 C7orf77A4D0Y5 90 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 SOX15O60248 233 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 YIF1AO95070 293 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 FSTL3O95633 263 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 IGFBP2P18065 325 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 USF1P22415 310 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-216ENST00000541410 ZFP36P26651 326 aaKnown RBP11.7□□□□□ -0.54
CLIP1-216ENST00000541410 RAB13P51153 203 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 DLK1P80370 383 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 WT1-ASQ06250 92 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 FAM71F2Q6NXP2 309 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 LHFPL4Q7Z7J7 247 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 OR5B3Q8NH48 314 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 C8orf46Q8TAG6 207 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 ISOC2Q96AB3 205 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 NPVFQ9HCQ7 196 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 PXMP4Q9Y6I8 212 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 A6NNC1 897 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 RNASE2P10153 161 aaKnown RBP11.7□□□□□ -0.54
CLIP1-216ENST00000541410 GATA2P23769 480 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-216ENST00000541410 GNB1P62873 340 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 LCN2P80188 198 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 LY6G5BQ8NDX9 201 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 OR1L8Q8NGR8 309 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 TMEM167AQ8TBQ9 72 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 FKBP11Q9NYL4 201 aa11.7□□□□□ -0.54
CLIP1-216ENST00000541410 CTXND1A0A1B0GTU2 59 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 LY86O95711 162 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 MC5RP33032 325 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 CDC34P49427 236 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-216ENST00000541410 MRGPRG-AS1Q2M3A8 158 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 ACTR3CQ9C0K3 210 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-216ENST00000541410 IGKV1OR2-108A0A075B7D4 117 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 hCG_1809904A0A1W2PP81 198 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 A0A1W2PPE2 198 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 A0A1W2PR64 198 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 A0A1W2PRV1 198 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 H3BQ15 152 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms