RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 FAM120AOSQ5T036 256 aa14.15□□□□□ -0.14
CLIP1-215ENST00000541108 STOML3Q8TAV4 291 aa14.15□□□□□ -0.14
CLIP1-215ENST00000541108 OPN1MWP04001 364 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 OPN1MW2P0DN77 364 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 OPN1MW3P0DN78 364 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 CLEC9AQ6UXN8 241 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 C9orf139Q6ZV77 190 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 MRPL41Q8IXM3 137 aaKnown RBP14.14□□□□□ -0.15
CLIP1-215ENST00000541108 OR5C1Q8NGR4 320 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 HINT2Q9BX68 163 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 NCBP2LA6PVI3 153 aaKnown RBP14.14□□□□□ -0.15
CLIP1-215ENST00000541108 E7EUB6 86 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 SMAD7O15105 426 aaKnown RBP14.14□□□□□ -0.15
CLIP1-215ENST00000541108 IFNA10P01566 189 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 METTL15P1P0C7V9 234 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 HTR2BP41595 481 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 UBA52P62987 128 aaKnown RBP14.14□□□□□ -0.15
CLIP1-215ENST00000541108 ERHP84090 104 aaKnown RBP14.14□□□□□ -0.15
CLIP1-215ENST00000541108 ZNF266Q14584 549 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 TNXAQ16473 311 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 LRRC75BQ2VPJ9 315 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 HSD17B13Q7Z5P4 300 aaPredicted RBP14.14□□□□□ -0.15
CLIP1-215ENST00000541108 TMEM217Q8N7C4 229 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 UBAC2Q8NBM4 344 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 OR1S2Q8NGQ3 325 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 PIFOQ8TCI5 191 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 OR4C12Q96R67 309 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 SSX3Q99909 188 aa14.14□□□□□ -0.15
CLIP1-215ENST00000541108 ZANQ9Y493 2812 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 CSPG4Q6UVK1 2322 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 C15orf62A8K5M9 175 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 PMS2P5A8MQ11 134 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 FCN1O00602 326 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 TPT1P13693 172 aaKnown RBP14.13□□□□□ -0.15
CLIP1-215ENST00000541108 RPL27AP46776 148 aaKnown RBP14.13□□□□□ -0.15
CLIP1-215ENST00000541108 RAB11AP62491 216 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 TMEM267Q0VDI3 215 aaPredicted RBP14.13□□□□□ -0.15
CLIP1-215ENST00000541108 FBLN7Q53RD9 439 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 ZNF767PQ75MW2 155 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 SLC24A4Q8NFF2 622 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 ST8SIA2Q92186 375 aa14.13□□□□□ -0.15
CLIP1-215ENST00000541108 PINX1Q96BK5 328 aaKnown RBP14.13□□□□□ -0.15
CLIP1-215ENST00000541108 BSCL2Q96G97 398 aaPredicted RBP14.13□□□□□ -0.15
CLIP1-215ENST00000541108 SRSF8Q9BRL6 282 aaKnown RBP14.13□□□□□ -0.15
CLIP1-215ENST00000541108 BORCS7-ASMTA0A0B4J1R7 106 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 CGB1A6NKQ9 187 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 DFFBO76075 338 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 IFNA7P01567 189 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 BSXQ3C1V8 233 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 ZNF562Q6V9R5 426 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 BAP18Q8IXM2 172 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 ZNF680Q8NEM1 530 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 OR10P1Q8NGE3 313 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 PHYHIPLQ96FC7 376 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 SMIM3Q9BZL3 60 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 CELSR1Q9NYQ6 3014 aa14.12□□□□□ -0.15
CLIP1-215ENST00000541108 CA2P00918 260 aa14.11□□□□□ -0.15
CLIP1-215ENST00000541108 SNCAP37840 140 aa14.11□□□□□ -0.15
CLIP1-215ENST00000541108 SSBP2P81877 361 aaPredicted RBP14.11□□□□□ -0.15
CLIP1-215ENST00000541108 ATP6V1FQ16864 119 aa14.11□□□□□ -0.15
CLIP1-215ENST00000541108 C10orf55Q5SWW7 151 aa14.11□□□□□ -0.15
CLIP1-215ENST00000541108 RPL7L1Q6DKI1 246 aaKnown RBP14.11□□□□□ -0.15
CLIP1-215ENST00000541108 Q8N9W7 124 aa14.11□□□□□ -0.15
CLIP1-215ENST00000541108 OR10W1Q8NGF6 305 aa14.11□□□□□ -0.15
CLIP1-215ENST00000541108 SRSF12Q8WXF0 261 aaKnown RBP14.11□□□□□ -0.15
CLIP1-215ENST00000541108 RBM14Q96PK6 669 aaKnown RBP14.11□□□□□ -0.15
CLIP1-215ENST00000541108 PLXNB1O43157 2135 aa14.11□□□□□ -0.15
CLIP1-215ENST00000541108 A0A1B0GW64 132 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 CD5LO43866 347 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 OR8U8P0C7N1 319 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 NPY1RP25929 384 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 C2orf83Q53S99 150 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 HAPLN4Q86UW8 402 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 ATP5SQ99766 215 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 TEX15Q9BXT5 2789 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 WFDC1Q9HC57 220 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 PITPNC1Q9UKF7 332 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 PAIP2BQ9ULR5 123 aaKnown RBP14.1□□□□□ -0.15
CLIP1-215ENST00000541108 FGF16O43320 207 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 CNIH1O95406 144 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 CFDP00746 253 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-215ENST00000541108 HLA-DRB1P01911 266 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 GNB1P62873 340 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 WT1-ASQ06250 92 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 ARL16Q0P5N6 197 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 CLINT1Q14677 625 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 RASL11BQ9BPW5 248 aa14.1□□□□□ -0.15
CLIP1-215ENST00000541108 SOX21Q9Y651 276 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-215ENST00000541108 ZNF469Q96JG9 3925 aaPredicted RBP14.09□□□□□ -0.15
CLIP1-215ENST00000541108 IGLC7A0M8Q6 106 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 SUB1P53999 127 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLIP1-215ENST00000541108 EXOSC2Q13868 293 aaKnown RBP14.09□□□□□ -0.15
CLIP1-215ENST00000541108 FXYD3Q14802 87 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 OR8G2PQ6IF36 304 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 ETV3LQ6ZN32 361 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 TMEM170AQ8WVE7 144 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 SLC25A33Q9BSK2 321 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 GGACTQ9BVM4 153 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 ARV1Q9H2C2 271 aa14.09□□□□□ -0.15
CLIP1-215ENST00000541108 H3BUX3 64 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms