RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PRR30Q53SZ7 412 aaPredicted RBP11.79□□□□□ -0.52
USP3-204ENST00000540797 SPSB4Q96A44 273 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 TMEM191AQ9H0A3 160 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 FBLN5Q9UBX5 448 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 C1QTNF9BB2RNN3 333 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 C1QTNF9P0C862 333 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 CRYBB3P26998 211 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 CD81P60033 236 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 ELOBQ15370 118 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 RTBDNQ9BSG5 229 aaPredicted RBP11.79□□□□□ -0.52
USP3-204ENST00000540797 LINC00862A6NCI5 91 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 SRRM5B3KS81 715 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 GOLT1AQ6ZVE7 132 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 LOC389332A0A1B0GUA5 103 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 RPS20P60866 119 aaKnown RBP11.78□□□□□ -0.52
USP3-204ENST00000540797 TMEM177Q53S58 311 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 GTF3AQ92664 365 aaKnown RBP11.78□□□□□ -0.52
USP3-204ENST00000540797 UBE2L6O14933 153 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 AMMECR1LQ6DCA0 310 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 ZNF841Q6ZN19 808 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 SGK494Q96LW2 274 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.78□□□□□ -0.52
USP3-204ENST00000540797 J3QRE1 110 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 RRHO14718 337 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 CLDND2Q8NHS1 167 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 SSC4DQ8WTU2 575 aa11.78□□□□□ -0.52
USP3-204ENST00000540797 NPIPB6E9PJ23 425 aa11.77□□□□□ -0.52
USP3-204ENST00000540797 ARTNQ5T4W7 220 aa11.77□□□□□ -0.52
USP3-204ENST00000540797 C12orf57Q99622 126 aa11.77□□□□□ -0.52
USP3-204ENST00000540797 GGACTQ9BVM4 153 aa11.77□□□□□ -0.52
USP3-204ENST00000540797 TICRRQ7Z2Z1 1910 aa11.77□□□□□ -0.52
USP3-204ENST00000540797 ZNF474Q6S9Z5 364 aaPredicted RBP11.77□□□□□ -0.52
USP3-204ENST00000540797 GSX1Q9H4S2 264 aaPredicted RBP11.77□□□□□ -0.52
USP3-204ENST00000540797 FOXI3A8MTJ6 420 aaPredicted RBP11.77□□□□□ -0.53
USP3-204ENST00000540797 TMEM178BH3BS89 294 aa11.77□□□□□ -0.53
USP3-204ENST00000540797 UPK2O00526 184 aa11.77□□□□□ -0.53
USP3-204ENST00000540797 FAM53AQ6NSI3 398 aaPredicted RBP11.77□□□□□ -0.53
USP3-204ENST00000540797 IGHV3OR16-8A0A075B7F1 116 aa11.77□□□□□ -0.53
USP3-204ENST00000540797 TIMM23O14925 209 aa11.77□□□□□ -0.53
USP3-204ENST00000540797 F12P00748 615 aaPredicted RBP11.77□□□□□ -0.53
USP3-204ENST00000540797 ZNF250P15622 560 aa11.77□□□□□ -0.53
USP3-204ENST00000540797 RPL13AP40429 203 aaKnown RBP11.77□□□□□ -0.53
USP3-204ENST00000540797 OR8A1Q8NGG7 326 aa11.77□□□□□ -0.53
USP3-204ENST00000540797 PEMTQ9UBM1 199 aa11.77□□□□□ -0.53
USP3-204ENST00000540797 IGKV1D-13A0A0B4J2D9 117 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 IGKV1-13P0DP09 117 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 IGFBP2P18065 325 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 GCHFRP30047 84 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 CD69Q07108 199 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 TMEM183BQ1AE95 376 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 RNASEH2CQ8TDP1 164 aaKnown RBP11.76□□□□□ -0.53
USP3-204ENST00000540797 ITLN2Q8WWU7 325 aaPredicted RBP11.76□□□□□ -0.53
USP3-204ENST00000540797 SRSF12Q8WXF0 261 aaKnown RBP11.76□□□□□ -0.53
USP3-204ENST00000540797 SLC25A28Q96A46 364 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 CRIM1Q9NZV1 1036 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 DOCK8Q8NF50 2099 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 ERVH48-1M5A8F1 160 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 ICAM4Q14773 271 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 FAM159AQ6UWV7 190 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 PSMG3Q9BT73 122 aaPredicted RBP11.76□□□□□ -0.53
USP3-204ENST00000540797 HSPB8Q9UJY1 196 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 B4DSR2 109 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 SCGB1D4Q6XE38 83 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 FAM89BQ8N5H3 189 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 NPCDR1Q9BY65 106 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 CD99P14209 185 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 CKS2P33552 79 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 TNFRSF14Q92956 283 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 CACNA1HO95180 2353 aa11.76□□□□□ -0.53
USP3-204ENST00000540797 IGKV1-12A0A0C4DH73 117 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 AP4M1O00189 453 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 IGKV1D-12P01611 117 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 VAMP3Q15836 100 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 PGLYRP4Q96LB8 373 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 DMRTA2Q96SC8 542 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 AP5S1Q9NUS5 200 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 WNT2P09544 360 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 SELLP14151 372 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 MEOX2P50222 304 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 NCMAPQ5T1S8 102 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 WDR25Q64LD2 544 aaPredicted RBP11.75□□□□□ -0.53
USP3-204ENST00000540797 CACNG8Q8WXS5 425 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 MED12Q93074 2177 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 ZP1P60852 638 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 RELBQ01201 579 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 NR2C2APQ86WQ0 139 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 NMBP08949 121 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 FOSL1P15407 271 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 SP5Q6BEB4 398 aaPredicted RBP11.75□□□□□ -0.53
USP3-204ENST00000540797 ESPL1Q14674 2120 aa11.75□□□□□ -0.53
USP3-204ENST00000540797 NBEAP1P0C6P0 100 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 AREGP15514 252 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 RPL29P47914 159 aaKnown RBP11.74□□□□□ -0.53
USP3-204ENST00000540797 FAM166AQ6J272 317 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 CD8AP01732 235 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 DANCRP0C864 163 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 Q5BKY6 102 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 SAPCD1Q5SSQ6 148 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 VMO1Q7Z5L0 202 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 SMUG1Q53HV7 270 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms