RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ARPC1AQ92747 370 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 DUX5Q96PT3 197 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 NPFFR1Q9GZQ6 430 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 MED28Q9H204 178 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 SERTAD4Q9NUC0 356 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 FKBP11Q9NYL4 201 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 NSG2Q9Y328 171 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 COL6A5A8TX70 2615 aa8.3□□□□□ -1.08
VPS33A-204ENST00000540669 SH2D7A6NKC9 451 aaPredicted RBP8.29□□□□□ -1.08
VPS33A-204ENST00000540669 LINC01548A6NM66 108 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 NCBP2LA6PVI3 153 aaKnown RBP8.29□□□□□ -1.08
VPS33A-204ENST00000540669 H0YIZ8 118 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 ATP6V0E1O15342 81 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 SIX6O95475 246 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 TMEM50AO95807 157 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 IFNA21P01568 189 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 MBPP02686 304 aaPredicted RBP8.29□□□□□ -1.08
VPS33A-204ENST00000540669 CRYGCP07315 174 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 PPIFP30405 207 aaKnown RBP8.29□□□□□ -1.08
VPS33A-204ENST00000540669 RPL27AP46776 148 aaKnown RBP8.29□□□□□ -1.08
VPS33A-204ENST00000540669 SPCS3P61009 180 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 WT1-ASQ06250 92 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 FOXL1Q12952 345 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 CXorf66Q5JRM2 361 aaPredicted RBP8.29□□□□□ -1.08
VPS33A-204ENST00000540669 GSG1LQ6UXU4 331 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 OR1L8Q8NGR8 309 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 TMEM170AQ8WVE7 144 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 ST6GAL2Q96JF0 529 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 RASL11BQ9BPW5 248 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 ZNF436Q9C0F3 470 aaPredicted RBP8.29□□□□□ -1.08
VPS33A-204ENST00000540669 OR51B2Q9Y5P1 312 aa8.29□□□□□ -1.08
VPS33A-204ENST00000540669 TRAV14DV4A0A0A6YYC5 116 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 NPIPB5A8MRT5 1133 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 SOX15O60248 233 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 SNAPC5O75971 98 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 CTRB1P17538 263 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 PAX9P55771 341 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 RAP2BP61225 183 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 FXYD3Q14802 87 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 TNXAQ16473 311 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 KRTAP24-1Q3LI83 254 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 AKIRIN2Q53H80 203 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 CTRB2Q6GPI1 263 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 C11orf87Q6NUJ2 197 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 HSD17B13Q7Z5P4 300 aaPredicted RBP8.28□□□□□ -1.08
VPS33A-204ENST00000540669 RNF152Q8N8N0 203 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 OR4A16Q8NH70 328 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 MYOZ3Q8TDC0 251 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 COMMD5Q9GZQ3 224 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 DMRT1Q9Y5R6 373 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 STAB1Q9NY15 2570 aa8.28□□□□□ -1.08
VPS33A-204ENST00000540669 VWFP04275 2813 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 A0A1B0GUS0 222 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 PRSS46E5RG02 174 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 K7EPK0 472 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 AP4M1O00189 453 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 IGLV1-40P01703 118 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 AREGP15514 252 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 NKX2-1P43699 371 aaPredicted RBP8.27□□□□□ -1.09
VPS33A-204ENST00000540669 TAS2R30P59541 319 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 CYCSP99999 105 aaKnown RBP8.27□□□□□ -1.09
VPS33A-204ENST00000540669 RAB32Q13637 225 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 TMEM95Q3KNT9 176 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 SLC35E3Q7Z769 313 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 TCTE3Q8IZS6 198 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 LINC00528Q8N1L1 170 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 OR2C3Q8N628 320 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.27□□□□□ -1.09
VPS33A-204ENST00000540669 C3orf56Q8N813 242 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 OR10W1Q8NGF6 305 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 OR4F5Q8NH21 305 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 RNASE11Q8TAA1 199 aaKnown RBP8.27□□□□□ -1.09
VPS33A-204ENST00000540669 FAM110DQ8TAY7 271 aaPredicted RBP8.27□□□□□ -1.09
VPS33A-204ENST00000540669 PPP1R1CQ8WVI7 109 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 TMEM68Q96MH6 324 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 NEURL2Q9BR09 285 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 PRSS22Q9GZN4 317 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 RBKSQ9H477 322 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 TNFRSF19Q9NS68 423 aa8.27□□□□□ -1.09
VPS33A-204ENST00000540669 LCE2BO14633 110 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 SYNGR2O43760 224 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 DEDDO75618 318 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 MPC2O95563 127 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 LY86O95711 162 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 HKR1P10072 659 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 RNASE2P10153 161 aaKnown RBP8.26□□□□□ -1.09
VPS33A-204ENST00000540669 MFAP2P55001 183 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 POLR2GP62487 172 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS33A-204ENST00000540669 PLGLAQ15195 96 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 ARSJQ5FYB0 599 aaPredicted RBP8.26□□□□□ -1.09
VPS33A-204ENST00000540669 STPG2Q8N412 459 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 TTC9CQ8N5M4 171 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 UXS1Q8NBZ7 420 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 OR1S1Q8NH92 325 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 CLCC1Q96S66 551 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 FAM103A1Q9BTL3 118 aaKnown RBP8.26□□□□□ -1.09
VPS33A-204ENST00000540669 RNF126Q9BV68 326 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 WSB1Q9Y6I7 421 aa8.26□□□□□ -1.09
VPS33A-204ENST00000540669 IGLV11-55A0A075B6I3 123 aa8.25□□□□□ -1.09
VPS33A-204ENST00000540669 TRBV9A0A0B4J1U6 114 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms