RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 GNB1LQ9BYB4 327 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 CHODLQ9H9P2 273 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 SLC45A2Q9UMX9 530 aa9.3□□□□□ -0.92
SYNE1-237ENST00000539504 TNFSF15O95150 251 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 TRIP6Q15654 476 aaKnown RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 MORN2Q502X0 79 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 CD177Q8N6Q3 437 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 RCHY1Q96PM5 261 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 ZNF331Q9NQX6 463 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 C9JCJ5 164 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 CA1P00915 261 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 OR4S2Q8NH73 311 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 PPP1R35Q8TAP8 253 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 SLC35E1Q96K37 410 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 OPN3Q9H1Y3 402 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 NCOR1O75376 2440 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 TRBV9A0A0B4J1U6 114 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 LAMTOR5O43504 91 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 MT-ND6P03923 174 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 GAGE1Q13065 139 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 ASPHD1Q5U4P2 390 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 MRPL52Q86TS9 123 aaKnown RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 C1orf174Q8IYL3 243 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 TRIB1Q96RU8 372 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 CDX2Q99626 313 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 NABP2Q9BQ15 211 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 SSBP3Q9BWW4 388 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 TMEM167BQ9NRX6 74 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 SPRR3Q9UBC9 169 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 UQCR10Q9UDW1 63 aa9.29□□□□□ -0.92
SYNE1-237ENST00000539504 TNRC6BQ9UPQ9 1833 aaKnown RBP9.29□□□□□ -0.92
SYNE1-237ENST00000539504 LINC00614P0C842 121 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 ESDP10768 282 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 PCP4P48539 62 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 IBA57Q5T440 356 aaKnown RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 TRAT1Q6PIZ9 186 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 ZNRF1Q8ND25 227 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 KCNS1Q96KK3 526 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 PPP1R14DQ9NXH3 145 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 A0A1W2PS18 150 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 C9orf172C9J069 976 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 C15orf65H3BRN8 121 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 OR5G3P0C626 314 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 MOB3BQ86TA1 216 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 TECRQ9NZ01 308 aaKnown RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 MAP1BP46821 2468 aaKnown RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 DPRXA6NFQ7 191 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 USF1P22415 310 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 HINT1P49773 126 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 HSPE1P61604 102 aaKnown RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 CX3CL1P78423 397 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 RELQ04864 619 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 LYG1Q8N1E2 194 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 OR52E5Q8NH55 327 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 PRR7Q8TB68 274 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 CORO2AQ92828 525 aa9.28□□□□□ -0.92
SYNE1-237ENST00000539504 LSM4Q9Y4Z0 139 aaKnown RBP9.28□□□□□ -0.92
SYNE1-237ENST00000539504 ZNF324O75467 553 aaPredicted RBP9.27□□□□□ -0.92
SYNE1-237ENST00000539504 APCSP02743 223 aa9.27□□□□□ -0.92
SYNE1-237ENST00000539504 COMPP49747 757 aaPredicted RBP9.27□□□□□ -0.92
SYNE1-237ENST00000539504 ZNF134P52741 427 aa9.27□□□□□ -0.92
SYNE1-237ENST00000539504 OR4A47Q6IF82 309 aa9.27□□□□□ -0.92
SYNE1-237ENST00000539504 INO80CQ6PI98 192 aaPredicted RBP9.27□□□□□ -0.92
SYNE1-237ENST00000539504 C11orf52Q96A22 123 aa9.27□□□□□ -0.92
SYNE1-237ENST00000539504 ZPBPQ9BS86 351 aa9.27□□□□□ -0.92
SYNE1-237ENST00000539504 SFXN3Q9BWM7 321 aa9.27□□□□□ -0.92
SYNE1-237ENST00000539504 JPT1Q9UK76 154 aa9.27□□□□□ -0.92
SYNE1-237ENST00000539504 C20orf202A1L168 122 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 C3orf79P0CE67 100 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 ZNF83P51522 516 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 PTTG1IPP53801 180 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 LCN12Q6JVE5 192 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 TMEM136Q6ZRR5 245 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 ZFP30Q9Y2G7 519 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 AHRRA9YTQ3 701 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 PRSS46E5RG02 174 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 HSBP1O75506 76 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 AMY1AP04745 511 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 GNG10P50151 68 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 TMPRSS3P57727 454 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 RNFT1Q5M7Z0 435 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 PRR27Q6MZM9 219 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 KLHDC1Q8N7A1 406 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 STPG4Q8N801 248 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 C1orf159Q96HA4 380 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 LAMTOR2Q9Y2Q5 125 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 CADP27708 2225 aa9.27□□□□□ -0.93
SYNE1-237ENST00000539504 FAM90A9PA6NNJ1 464 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 C15orf61A6NNL5 157 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 ZNF891A8MT65 544 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-237ENST00000539504 TAS2R45P59539 299 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 MRPS11P82912 194 aaKnown RBP9.26□□□□□ -0.93
SYNE1-237ENST00000539504 ATP1A1-AS1Q5TC04 95 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 OR51B2Q9Y5P1 312 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 LY96Q9Y6Y9 160 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 HCFC1P51610 2035 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 HLA-DQA1P01909 254 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 STUMQ69YW2 141 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 CLCF1Q9UBD9 225 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 NBEAQ8NFP9 2946 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms