RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 OR4C46A6NHA9 309 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 K7EMT4 169 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 SULT1C2O00338 296 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 S1PR2O95136 353 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 SERPINE2P07093 398 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 ARPC4P59998 168 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 OR10W1Q8NGF6 305 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 LGALS14Q8TCE9 139 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 CD300LFQ8TDQ1 290 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 PHLDA1Q8WV24 401 aaPredicted RBP10.02□□□□□ -0.81
SS18-204ENST00000539244 MAP6D1Q9H9H5 199 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 TMEM140Q9NV12 185 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 TXNL4BQ9NX01 149 aaKnown RBP10.02□□□□□ -0.81
SS18-204ENST00000539244 RHBDL2Q9NX52 303 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 COMMD9Q9P000 198 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 DAPK2Q9UIK4 370 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 HECTD4Q9Y4D8 3996 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 OR2T8A6NH00 312 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 F8W735 103 aaPredicted RBP10.01□□□□□ -0.81
SS18-204ENST00000539244 MRPS14O60783 128 aaKnown RBP10.01□□□□□ -0.81
SS18-204ENST00000539244 SCAND1P57086 179 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 WT1-ASQ06250 92 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 SFXN4Q6P4A7 337 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 HOGA1Q86XE5 327 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 CADM3Q8N126 398 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 GVQW1Q8N7I0 195 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 SLC5A7Q9GZV3 580 aa10.01□□□□□ -0.81
SS18-204ENST00000539244 HERC2O95714 4834 aa10□□□□□ -0.81
SS18-204ENST00000539244 C15orf62A8K5M9 175 aa10□□□□□ -0.81
SS18-204ENST00000539244 DEDDO75618 318 aa10□□□□□ -0.81
SS18-204ENST00000539244 TRAPPC2P0DI81 140 aa10□□□□□ -0.81
SS18-204ENST00000539244 TRAPPC2BP0DI82 140 aa10□□□□□ -0.81
SS18-204ENST00000539244 OR13C7P0DN81 318 aa10□□□□□ -0.81
SS18-204ENST00000539244 PTHLHP12272 177 aa10□□□□□ -0.81
SS18-204ENST00000539244 RPA2P15927 270 aa10□□□□□ -0.81
SS18-204ENST00000539244 RPL35AP18077 110 aaKnown RBP10□□□□□ -0.81
SS18-204ENST00000539244 MFAP2P55001 183 aa10□□□□□ -0.81
SS18-204ENST00000539244 UBE2UQ5VVX9 321 aa10□□□□□ -0.81
SS18-204ENST00000539244 ZNF818PQ6ZRF7 136 aa10□□□□□ -0.81
SS18-204ENST00000539244 DMBX1Q8NFW5 382 aa10□□□□□ -0.81
SS18-204ENST00000539244 OR1L8Q8NGR8 309 aa10□□□□□ -0.81
SS18-204ENST00000539244 GATAD1Q8WUU5 269 aa10□□□□□ -0.81
SS18-204ENST00000539244 GIMAP1Q8WWP7 306 aa10□□□□□ -0.81
SS18-204ENST00000539244 CHRDL1Q9BU40 450 aa10□□□□□ -0.81
SS18-204ENST00000539244 RRP15Q9Y3B9 282 aaKnown RBP10□□□□□ -0.81
SS18-204ENST00000539244 F11RQ9Y624 299 aaKnown RBP10□□□□□ -0.81
SS18-204ENST00000539244 A0A0A6YYH2 397 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 TEX50A0A1B0GTY4 177 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 A6NJ64 397 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 K7EIM0 57 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 CTSDP07339 412 aaPredicted RBP9.99□□□□□ -0.81
SS18-204ENST00000539244 FCGR2BP31994 310 aaPredicted RBP9.99□□□□□ -0.81
SS18-204ENST00000539244 ADMP35318 185 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 HSPA13P48723 471 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 GABARAPL2P60520 117 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 SLC25A24Q6NUK1 477 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 OR51H1Q8NH63 302 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 SCARB1Q8WTV0 552 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 BORCS5Q969J3 196 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 SLC25A38Q96DW6 304 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 ZNF414Q96IQ9 312 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 CNBD2Q96M20 576 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 C6orf62Q9GZU0 229 aaPredicted RBP9.99□□□□□ -0.81
SS18-204ENST00000539244 NDUFA4L2Q9NRX3 87 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 C21orf62Q9NYP8 219 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 ETV7Q9Y603 341 aa9.99□□□□□ -0.81
SS18-204ENST00000539244 TRAV18A0A075B6X5 111 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 MARCH11A6NNE9 402 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 CMC4P56277 68 aaPredicted RBP9.98□□□□□ -0.81
SS18-204ENST00000539244 FXYD4P59646 89 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 AADACL3Q5VUY0 350 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 OR5AP2Q8NGF4 316 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 LSM10Q969L4 123 aaKnown RBP9.98□□□□□ -0.81
SS18-204ENST00000539244 C20orf24Q9BUV8 137 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 CSTL1Q9H114 145 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 C11orf68Q9H3H3 251 aaKnown RBP9.98□□□□□ -0.81
SS18-204ENST00000539244 SMPXQ9UHP9 88 aa9.98□□□□□ -0.81
SS18-204ENST00000539244 ANKRD65E5RJM6 399 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 CTSGP08311 255 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 F2RP25116 425 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 GNRHRP30968 328 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 ERVK-16P61578 105 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 IZUMO2Q6UXV1 221 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 TMEM17Q86X19 198 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 APRG1Q8IVJ8 170 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 OR5H6Q8NGV6 325 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 OR5B3Q8NH48 314 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 OR10C1Q96KK4 312 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 RNF2Q99496 336 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 MFFQ9GZY8 342 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 VCX3BQ9H321 246 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 SSR3Q9UNL2 185 aa9.97□□□□□ -0.81
SS18-204ENST00000539244 IGHV3OR16-8A0A075B7F1 116 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 IGHV3-21A0A0B4J1V1 117 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 IGHV7-4-1A0A0J9YVY3 117 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 MPTX1A8MV57 137 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 CHEK1O14757 476 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 ZNF207O43670 478 aaKnown RBP9.96□□□□□ -0.82
SS18-204ENST00000539244 PSMB9P28065 219 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 SDC2P34741 201 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms