RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ARHGDIBP52566 201 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 DLX1P56177 255 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 OR2B8PP59922 312 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 HILS1P60008 231 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 ARF6P62330 175 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 AARDQ4LEZ3 155 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 SPINK9Q5DT21 86 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 SLC25A24Q6NUK1 477 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 SVBPQ8N300 66 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 LILRB2Q8N423 598 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 TEX29Q8N6K0 151 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 OR4A16Q8NH70 328 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 FAM213BQ8TBF2 198 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 ZNF48Q96MX3 618 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-208ENST00000537004 CIB3Q96Q77 187 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-208ENST00000537004 OR4C12Q96R67 309 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 TMEM231Q9H6L2 316 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 MDFIC2A0A1B0GVS7 189 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 SLC38A11Q08AI6 406 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 OR8G2PQ6IF36 304 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 SIGLECL1Q8N7X8 197 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 TREM1Q9NP99 234 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 TMEM140Q9NV12 185 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 FAM96BQ9Y3D0 163 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 NBEAL1Q6ZS30 2694 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 SNAPINO95295 136 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 IFNA17P01571 189 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 RELBQ01201 579 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 SCGB2A2Q13296 93 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 RUSC1-AS1Q66K80 236 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 THNSL2Q86YJ6 484 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 SCGB1C1Q8TD33 95 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 RHOVQ96L33 236 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 TBX15Q96SF7 602 aa9.63□□□□□ -0.87
CLIP1-208ENST00000537004 FBN3Q75N90 2809 aa9.62□□□□□ -0.87
CLIP1-208ENST00000537004 CT45A6P0DMU7 189 aa9.62□□□□□ -0.87
CLIP1-208ENST00000537004 CT45A5P0DMU8 189 aa9.62□□□□□ -0.87
CLIP1-208ENST00000537004 CT45A7P0DMV0 189 aa9.62□□□□□ -0.87
CLIP1-208ENST00000537004 DLX6P56179 175 aa9.62□□□□□ -0.87
CLIP1-208ENST00000537004 DHRS7BQ6IAN0 325 aaPredicted RBP9.62□□□□□ -0.87
CLIP1-208ENST00000537004 ZNF833PQ6ZTB9 187 aa9.62□□□□□ -0.87
CLIP1-208ENST00000537004 TAF15Q92804 592 aaKnown RBP eCLIP9.62□□□□□ -0.87
CLIP1-208ENST00000537004 UQCC1Q9NVA1 299 aa9.62□□□□□ -0.87
CLIP1-208ENST00000537004 TRAV3A0A0B4J244 114 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 RNASEK-C17orf49H0YIS7 233 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 TOX4O94842 621 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 PPIAL4GP0DN37 164 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 ADCYAP1P18509 176 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 SNCAP37840 140 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 SPCS3P61009 180 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 RTL8BQ17RB0 113 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 LRRC75BQ2VPJ9 315 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 AKR1C8PQ5T2L2 129 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 OR4A47Q6IF82 309 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 COMMD1Q8N668 190 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 RSG1Q9BU20 258 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 TRBV23-1A0A0A0MS06 115 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 UBE2L5PA0A1B0GUS4 154 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 HRASP01112 189 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 CD5P06127 495 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 PDLIM3Q53GG5 364 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-208ENST00000537004 ZNF429Q86V71 674 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 PUSL1Q8N0Z8 303 aaKnown RBP9.61□□□□□ -0.87
CLIP1-208ENST00000537004 C8orf31Q8N9H6 132 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 OR52E5Q8NH55 327 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 LHX4Q969G2 390 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 RBMXL1Q96E39 390 aaKnown RBP9.61□□□□□ -0.87
CLIP1-208ENST00000537004 PARD6GQ9BYG4 376 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-208ENST00000537004 SIRPDQ9H106 197 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 SLC35D1Q9NTN3 355 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 ONECUT1Q9UBC0 465 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 FBXO7Q9Y3I1 522 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 TRRAPQ9Y4A5 3859 aa9.61□□□□□ -0.87
CLIP1-208ENST00000537004 CENPVL3A0A0U1RRI6 287 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 PMS2P5A8MQ11 134 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 J3QR06 171 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 LY86O95711 162 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 LIPFP07098 398 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 OR8U8P0C7N1 319 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 POU2AF1Q16633 256 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 C10orf91Q5T1B1 145 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 OR10P1Q8NGE3 313 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 OR13D1Q8NGV5 346 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 OR10X1Q8NGY0 326 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 ZNF596Q8TC21 504 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 SFT2D1Q8WV19 159 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 PINX1Q96BK5 328 aaKnown RBP9.6□□□□□ -0.87
CLIP1-208ENST00000537004 PSMG3Q9BT73 122 aaPredicted RBP9.6□□□□□ -0.87
CLIP1-208ENST00000537004 MRPL20Q9BYC9 149 aaKnown RBP9.6□□□□□ -0.87
CLIP1-208ENST00000537004 WDR61Q9GZS3 305 aaKnown RBP9.6□□□□□ -0.87
CLIP1-208ENST00000537004 SIRT7Q9NRC8 400 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 A0A087X0M5 115 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 A0A1B0GV50 99 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 A0A1B0GX30 115 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 DNAJC9-AS1A6NH13 148 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 C15orf61A6NNL5 157 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 IGKV1-16P04430 117 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 SMIM6P0DI80 62 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 IGHV1-8P0DP01 117 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 RPS16P62249 146 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms