RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 CD300EQ496F6 205 aaPredicted RBP10.09□□□□□ -0.79
VPS28-211ENST00000530790 FAM106AQ4KMX7 169 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 ZNF585BQ52M93 769 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 RNASE10Q5GAN6 216 aaKnown RBP10.09□□□□□ -0.79
VPS28-211ENST00000530790 GPHB5Q86YW7 130 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 LAX1Q8IWV1 398 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 CADM3Q8N126 398 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 C15orf40Q8WUR7 153 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 TSC22D3Q99576 134 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 THAP7Q9BT49 309 aaPredicted RBP10.09□□□□□ -0.79
VPS28-211ENST00000530790 FAM212BQ9NTI7 297 aaPredicted RBP10.09□□□□□ -0.79
VPS28-211ENST00000530790 PRNDQ9UKY0 176 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 NSG2Q9Y328 171 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 OR51B2Q9Y5P1 312 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 TEX50A0A1B0GTY4 177 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 ZNF320A2RRD8 509 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 A8MWP6 167 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 TPPPO94811 219 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 SERPINE2P07093 398 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 FOLR2P14207 255 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 PGAM2P15259 253 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 TBPP20226 339 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 MECP2P51608 486 aaKnown RBP10.08□□□□□ -0.8
VPS28-211ENST00000530790 CD81P60033 236 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 WT1-ASQ06250 92 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 ADAMTSL5Q6ZMM2 481 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 ARRDC1Q8N5I2 433 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 OR5B3Q8NH48 314 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 OR52I2Q8NH67 350 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 ZNF502Q8TBZ5 544 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 TMEM56Q96MV1 263 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 TUBA4BQ9H853 241 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 ZC4H2Q9NQZ6 224 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 NDUFA4L2Q9NRX3 87 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 C19orf73Q9NVV2 129 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 FKBP11Q9NYL4 201 aa10.08□□□□□ -0.8
VPS28-211ENST00000530790 TECRQ9NZ01 308 aaKnown RBP10.08□□□□□ -0.8
VPS28-211ENST00000530790 C15orf61A6NNL5 157 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 RGS5O15539 181 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 CD3DP04234 171 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 CLEC3BP05452 202 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 PTBP1P26599 531 aaKnown RBP eCLIP10.07□□□□□ -0.8
VPS28-211ENST00000530790 ALDH3B2P48448 385 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 VN1R17PQ8TDU5 208 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 CACNG8Q8WXS5 425 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 TM2D3Q9BRN9 247 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 PALMDQ9NP74 551 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 TMEM14BQ9NUH8 114 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 SLC2A8Q9NY64 477 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 KLK11Q9UBX7 282 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 MTFP1Q9UDX5 166 aa10.07□□□□□ -0.8
VPS28-211ENST00000530790 F11RQ9Y624 299 aaKnown RBP10.07□□□□□ -0.8
VPS28-211ENST00000530790 TMEM213A2RRL7 107 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 EDN2P20800 178 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 CBLN1P23435 193 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 PPP5CP53041 499 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 GUCA2BQ16661 112 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 DEFB114Q30KQ6 69 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 SLC25A24Q6NUK1 477 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 PLET1Q6UQ28 207 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 H2BFWTQ7Z2G1 175 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 CLVS1Q8IUQ0 354 aaPredicted RBP10.06□□□□□ -0.8
VPS28-211ENST00000530790 OR4A16Q8NH70 328 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 RAB2BQ8WUD1 216 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 MRGPRFQ96AM1 343 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 ZNF486Q96H40 463 aaPredicted RBP10.06□□□□□ -0.8
VPS28-211ENST00000530790 SEC22AQ96IW7 307 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 ABHD1Q96SE0 405 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 NEURL2Q9BR09 285 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 PLEKHA3Q9HB20 300 aa10.06□□□□□ -0.8
VPS28-211ENST00000530790 C3orf84H3BNL1 204 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 TGOLN2O43493 480 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 PI3P19957 117 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 PIGPP57054 158 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 TAS2R19P59542 299 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 RND3P61587 244 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 MRPS10P82664 201 aaKnown RBP10.05□□□□□ -0.8
VPS28-211ENST00000530790 SPCS2Q15005 226 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 ZNF57Q68EA5 555 aaPredicted RBP10.05□□□□□ -0.8
VPS28-211ENST00000530790 LHFPL1Q86WI0 220 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 OR1L6Q8NGR2 347 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 BSCL2Q96G97 398 aaPredicted RBP10.05□□□□□ -0.8
VPS28-211ENST00000530790 SPATA25Q9BR10 227 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 C21orf62Q9NYP8 219 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 UFC1Q9Y3C8 167 aa10.05□□□□□ -0.8
VPS28-211ENST00000530790 IGHV3-35A0A0C4DH35 117 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 OR2T8A6NH00 312 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 DBX1A6NMT0 343 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 GABARAPH6UMI1 98 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 NOL3O60936 208 aaKnown RBP10.04□□□□□ -0.8
VPS28-211ENST00000530790 RAB3DO95716 219 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 IGKV1-39P01597 117 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 IGKV1D-39P04432 117 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 SCGB2B2Q4G0G5 96 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 BTNL8Q6UX41 500 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 UNQ9165/PRO28630Q6UXU0 137 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 TMEM61Q8N0U2 210 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 CCDC71LQ8N9Z2 235 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 TMEM229BQ8NBD8 167 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 UXS1Q8NBZ7 420 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms