RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 HIGD2AQ9BW72 106 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 CDCA4Q9BXL8 241 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 UCK1Q9HA47 277 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 PAIP2BQ9ULR5 123 aaKnown RBP2.17□□□□□ -2.06
CD44-223ENST00000526553 MRPS16Q9Y3D3 137 aaKnown RBP2.17□□□□□ -2.06
CD44-223ENST00000526553 YLPM1P49750 1951 aaKnown RBP2.17□□□□□ -2.06
CD44-223ENST00000526553 USP24Q9UPU5 2620 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 CCDC171Q6TFL3 1326 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 ZNF638Q14966 1978 aaKnown RBP2.16□□□□□ -2.06
CD44-223ENST00000526553 PDCD11Q14690 1871 aaKnown RBP2.16□□□□□ -2.06
CD44-223ENST00000526553 IGKV1D-37A0A075B6S9 117 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 A8MWP6 167 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 C5orf67F2Z3F1 127 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 IFNA5P01569 189 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 IGLV6-57P01721 117 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 HLA-DRAP01903 254 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 SMIM10L2AP0DMW4 78 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 SMIM10L2BP0DMW5 78 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 CXCL2P19875 107 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 CXCL3P19876 107 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 RPL12P30050 165 aaKnown RBP2.16□□□□□ -2.06
CD44-223ENST00000526553 NKX2-5P52952 324 aaPredicted RBP2.16□□□□□ -2.06
CD44-223ENST00000526553 CEBPGP53567 150 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 MEF2BQ02080 365 aaPredicted RBP2.16□□□□□ -2.06
CD44-223ENST00000526553 BSPH1Q075Z2 132 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 PPP1R1AQ13522 171 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 PDGFRLQ15198 375 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 SLC9A3R2Q15599 337 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 BATFQ16520 125 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 IMPG1Q17R60 797 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 KRTAP25-1Q3LHN0 102 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 DEFB134Q4QY38 66 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 SPIN3Q5JUX0 258 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 NAA40Q86UY6 237 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 HS3ST5Q8IZT8 346 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 ZNF664Q8N3J9 261 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 PPTC7Q8NI37 304 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 TVP23CQ96ET8 276 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 C8orf76Q96K31 380 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 SLC35G5Q96KT7 338 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 TBX5Q99593 518 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 VCX3BQ9H321 246 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 HRASLSQ9HDD0 168 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 C3orf18Q9UK00 162 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 DKKL1Q9UK85 242 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 VPREB3Q9UKI3 123 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 PATJQ8NI35 1801 aa2.16□□□□□ -2.06
CD44-223ENST00000526553 GREB1Q4ZG55 1949 aa2.15□□□□□ -2.06
CD44-223ENST00000526553 SHANK1Q9Y566 2161 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 KCNK1O00180 336 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 TGOLN2O43493 480 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 MT-CO2P00403 227 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 CALB1P05937 261 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 SERPINA6P08185 405 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 IGHV3-30-3P0DP02 117 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 CD52P31358 61 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 CA7P43166 264 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 LINC00313P59037 77 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 HERVK_113P63121 156 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 BTN3A2P78410 334 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 HLA-DRB3P79483 266 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 GNA13Q14344 377 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 CST6Q15828 149 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 WHAMMP3Q1A5X7 153 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 CLVS2Q5SYC1 327 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 OR2V1Q8NHB1 315 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 MFSD8Q8NHS3 518 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 RAD51AP1Q96B01 352 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 CPNE2Q96FN4 548 aaPredicted RBP2.15□□□□□ -2.07
CD44-223ENST00000526553 EMC3Q9P0I2 261 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 MCTS1Q9ULC4 181 aaKnown RBP2.15□□□□□ -2.07
CD44-223ENST00000526553 HHLA2Q9UM44 414 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 GINS2Q9Y248 185 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 CARHSP1Q9Y2V2 147 aaKnown RBP2.15□□□□□ -2.07
CD44-223ENST00000526553 PI4KAP42356 2102 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 ZFYVE26Q68DK2 2539 aa2.15□□□□□ -2.07
CD44-223ENST00000526553 SETXQ7Z333 2677 aaKnown RBP2.14□□□□□ -2.07
CD44-223ENST00000526553 NUP205Q92621 2012 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 MRASO14807 208 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 HMGB3O15347 200 aaKnown RBP2.14□□□□□ -2.07
CD44-223ENST00000526553 CDS2O95674 445 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 UCHL3P15374 230 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 PPP1CCP36873 323 aaKnown RBP2.14□□□□□ -2.07
CD44-223ENST00000526553 TAS2R45P59539 299 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 MYL6P60660 151 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 BAMBIQ13145 260 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 ITGB3BPQ13352 177 aaPredicted RBP2.14□□□□□ -2.07
CD44-223ENST00000526553 UAP1Q16222 522 aaPredicted RBP2.14□□□□□ -2.07
CD44-223ENST00000526553 MRPL51Q4U2R6 128 aaKnown RBP2.14□□□□□ -2.07
CD44-223ENST00000526553 PYDC2Q56P42 97 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 FAM78BQ5VT40 261 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 RASSF6Q6ZTQ3 369 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 COMMD7Q86VX2 200 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 LYPD6Q86Y78 171 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 ZNF565Q8N9K5 539 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 TMEM161BQ8NDZ6 487 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 OR8K1Q8NGG5 319 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 OR2D3Q8NGH3 330 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 EEF1AKMT1Q8WVE0 214 aa2.14□□□□□ -2.07
CD44-223ENST00000526553 ANKRD36BP1Q96IX9 119 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms